# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	2.34e-21		
3bo5A	290	3.29e-21		
1zkkA	167	9.77e-21		
2r3aA	300	1.00e-20		
2igqA	285	3.87e-20		
1ml9A	302	1.11e-19	b.85.7.1	79282
2f69A	261	1.53e-19	b.76.2.1,b.85.7.1	133035,133036
2rfiA	285	1.78e-19		
1n6aA	259	6.15e-19	b.76.2.1,b.85.7.1	80121,80122
2o8jA	281	2.16e-18		
1p0yA	444	1.60e-08	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	1.74e-08	a.166.1.1,b.85.7.3	135976,135977
3silA	379	0.9655	b.68.1.1	27542
1m2tB	263	1.358	b.42.2.1,b.42.2.1	84762,84763
1zxuA	217	2.579	d.23.1.2	125796
1cruA	454	4.223	b.68.2.1	27617
2bazA	142	4.461		
3sil	379	4.494		
1a9xA	1058	6.245	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18550,31479,31657,31658,41502,41503
1ecfA	504	8.800	c.61.1.1,d.153.1.1	34053,41820
1k3iA	656	9.592	b.1.18.2,b.18.1.1,b.69.1.1	68113,68114,68115
2d5lA	706	11.88		
1lm5A	214	12.28	d.211.2.1	74029
2scpA	174	12.74	a.39.1.5	17256
1ppjB	439	13.63	d.185.1.1,d.185.1.1	104254,104255
2nutA	769	14.36		
1oaoC	729	14.69	e.26.1.3	86746
1rutX	188	15.13	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1cs0A	1073	15.22	a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2	18558,31487,31673,31674,41518,41519
1dunA	134	19.98	b.85.4.1	28371
1dv1A	449	20.31	b.84.2.1,c.30.1.1,d.142.1.2	28234,31641,41486
1hr6B	443	21.58	d.185.1.1,d.185.1.1	61166,61167
1y7bA	542	24.27	b.29.1.23,b.67.2.1	122687,122688
2bogX	286	25.52		
2oh5A	248	25.65		
1ppjA	446	26.44	d.185.1.1,d.185.1.1	104252,104253
2hr7A	486	26.47		
2gc7A	386	28.51	b.69.2.1	134954
1fs7A	485	29.29	a.138.1.3	19691
2owbA	335	29.69		
1vliA	385	30.10	b.85.1.1,c.1.10.6	108830,108831
2z2fA	129	33.41		
1tn3A	137	33.73	d.169.1.1	42423
1r13A	148	35.41	d.169.1.1,h.1.1.1	96782,96783
1e2wA	251	35.49	b.2.6.1,b.84.2.2	22466,28252
2i5nH	258	38.52	b.41.1.1,f.23.10.1	137064,137065
2tpt	440	39.65		
1vkkA	154	39.70	d.109.1.2	108669
2dafA	118	40.25		
1b9oA	123	40.46	d.2.1.2	36597
1yx2A	365	41.57		
1gz8A	299	44.53	d.144.1.7	83405
2gv5A	161	45.03		
1wqjB	80	45.23		
1dxrH	258	45.83	b.41.1.1,f.23.10.1	25456,43433
1ur1A	378	45.92	c.1.8.3	99804
2yzqA	282	47.17		
2q8nA	460	47.57		
1buuA	168	47.68	d.169.1.1,h.1.1.1	42366,45388
2z1aA	552	47.85		
1eaqA	140	48.43	b.2.5.6	76144
2hoeA	380	48.76	a.4.5.63,c.55.1.10,c.55.1.10	136639,136640,136641
2qzuA	491	49.24		
2vngA	180	51.66		
1qpcA	279	52.53	d.144.1.7	41685
1utcA	363	52.96	a.118.1.4,b.69.6.1	99914,99915
1mi3A	322	54.29	c.1.7.1	91274
2v05A	311	55.80		
1j7gA	144	56.37	c.110.1.1	84130
1wu2A	396	56.40	b.85.6.1,b.103.1.1,c.57.1.2	114884,114885,114886
2je6A	277	57.42		
1tonA	235	58.49	b.47.1.2	26307
1qtqA	553	61.44	b.53.1.2,c.26.1.1	26940,31579
1budA	197	63.27	d.92.1.9	40328
1mqoA	227	64.46	d.157.1.1	103846
2dh2A	424	65.27		
1ktgA	138	65.53	d.113.1.1	72972
2g72A	289	67.20	c.66.1.15	134724
2sli	679	67.34		
2imhA	231	67.56		
1oqjA	97	67.61	d.217.1.1	93417
1dv2A	452	70.05	b.84.2.1,c.30.1.1,d.142.1.2	28238,31645,41490
2aorA	223	70.49		
1yhvA	297	72.80		
1fo0A	116	73.29	b.1.1.1	20610
2q7dA	346	74.48		
1uteA	313	74.67	d.159.1.1	42078
1qfhA	212	74.90	b.1.18.10,b.1.18.10	21893,21894
2z1qA	577	75.79		
2d4yA	463	76.28		
1kcwA	1046	77.74	b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3	23151,23152,23153,23154,23155,23156
2pn1A	331	77.92		
1poiA	317	79.18	c.124.1.2	34153
1t5rA	284	80.00	f.6.1.1	106465
1kbpA	432	81.32	b.1.12.1,d.159.1.1	22349,42068
2v4bA	300	82.61		
1gpr	162	83.35		
2dg5A	366	83.95	d.153.1.6	131500
2b79A	144	84.70		
2psoA	237	87.26		
2e9xC	219	88.49