# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	8.64e-20		
3bo5A	290	1.25e-19		
1zkkA	167	2.64e-19		
2r3aA	300	3.09e-19		
2rfiA	285	3.23e-19		
2igqA	285	3.85e-19		
2o8jA	281	1.29e-18		
1ml9A	302	5.07e-18	b.85.7.1	79282
2f69A	261	5.46e-18	b.76.2.1,b.85.7.1	133035,133036
1n6aA	259	1.83e-17	b.76.2.1,b.85.7.1	80121,80122
1p0yA	444	7.77e-08	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	4.76e-07	a.166.1.1,b.85.7.3	135976,135977
2ag4A	164	3.801	b.95.1.1	126717
1svb	395	6.939		
1lm5A	214	7.785	d.211.2.1	74029
2bsyA	278	8.712	b.85.4.1,b.85.4.1	129129,129130
1rutX	188	14.63	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
2pcxA	220	14.92		
1vkkA	154	17.37	d.109.1.2	108669
2bazA	142	23.46		
2p52A	196	24.04		
1zxuA	217	26.75	d.23.1.2	125796
2dafA	118	27.63		
1lm7A	248	30.06	d.211.2.1	74031
2a19B	284	38.48		
2q4mA	217	39.04	d.23.1.2	139870
1dunA	134	39.35	b.85.4.1	28371
2f57A	317	39.55		
1eaqA	140	40.72	b.2.5.6	76144
1uolA	219	41.53	b.2.5.2	99695
2biqA	219	45.86		
1vm9A	111	46.32	b.33.1.1	108886
1buuA	168	50.62	d.169.1.1,h.1.1.1	42366,45388
1fo0A	116	50.79	b.1.1.1	20610
2zdrA	349	50.92		
1rzhH	260	51.84	b.41.1.1,f.23.10.1	98162,98163
2ioiA	201	53.38		
2j21A	219	54.24		
1dpoA	223	56.69	b.47.1.2	25975
1wqjB	80	57.04		
2b79A	144	57.24		
1gpr	162	60.12		
1e5kA	201	60.81	c.68.1.8	34578
2fwvA	226	61.23		
1tn3A	137	63.30	d.169.1.1	42423
1wleA	501	63.47		
1tkiA	321	64.18	d.144.1.7	41638
1jpaA	312	64.93	d.144.1.7	67011
1r13A	148	67.02	d.169.1.1,h.1.1.1	96782,96783
1e2wA	251	68.24	b.2.6.1,b.84.2.2	22466,28252
1w50A	411	69.50	b.50.1.2	109173
1s9rA	410	69.54	d.126.1.4	98758
1vliA	385	69.94	b.85.1.1,c.1.10.6	108830,108831
1xuuA	349	72.47	b.85.1.1,c.1.10.6	116067,116068
1yhvA	297	74.22		
1zoyB	252	76.42		
1v8yA	170	79.64	d.113.1.1	113581
2pn1A	331	80.27		
1ygaA	342	80.89		
2jz8A	87	80.94		
1qpcA	279	81.92	d.144.1.7	41685
1q3oA	109	85.01	b.36.1.1	95700
2qsfA	533	85.66		
1ktgA	138	86.00	d.113.1.1	72972
2ac0A	200	86.96	b.2.5.2	126539
1hg7A	66	87.26	b.85.1.1	28280
2nutB	753	88.38