# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bo5A	290	4.97e-21		
2qpwA	149	5.17e-21		
1zkkA	167	6.69e-21		
2rfiA	285	1.11e-20		
2igqA	285	1.89e-20		
2r3aA	300	1.98e-20		
2o8jA	281	8.33e-20		
2f69A	261	1.66e-19	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	3.32e-19	b.85.7.1	79282
1n6aA	259	6.66e-19	b.76.2.1,b.85.7.1	80121,80122
1p0yA	444	1.74e-08	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	8.73e-08	a.166.1.1,b.85.7.3	135976,135977
2ag4A	164	5.333	b.95.1.1	126717
1lm5A	214	11.74	d.211.2.1	74029
2dafA	118	15.06		
2bsyA	278	15.40	b.85.4.1,b.85.4.1	129129,129130
1svb	395	15.67		
1rutX	188	18.49	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1vkkA	154	19.41	d.109.1.2	108669
2pcxA	220	19.78		
2p52A	196	19.95		
2bazA	142	21.48		
1lm7A	248	30.02	d.211.2.1	74031
1tn3A	137	30.51	d.169.1.1	42423
2f57A	317	31.93		
1eaqA	140	33.43	b.2.5.6	76144
2b79A	144	36.46		
1uolA	219	38.89	b.2.5.2	99695
1tkiA	321	41.36	d.144.1.7	41638
1wqjB	80	46.10		
1r13A	148	46.49	d.169.1.1,h.1.1.1	96782,96783
1buuA	168	46.80	d.169.1.1,h.1.1.1	42366,45388
1dunA	134	46.86	b.85.4.1	28371
1v8yA	170	47.35	d.113.1.1	113581
2pn1A	331	47.63		
1e5kA	201	49.92	c.68.1.8	34578
1s9rA	410	51.99	d.126.1.4	98758
1dpoA	223	52.88	b.47.1.2	25975
1gpr	162	53.09		
2a19B	284	54.84		
1qpcA	279	56.08	d.144.1.7	41685
2ouxA	286	59.58		
2orzA	314	61.88		
2c30A	321	65.56		
1vm9A	111	66.31	b.33.1.1	108886
1kxgA	152	66.51	b.22.1.1	73145
1jpaA	312	67.33	d.144.1.7	67011
2bdwA	362	68.41		
1yhvA	297	69.67		
2bfxA	284	72.64		
1s98A	107	73.16	b.124.1.1	105377
2j21A	219	73.43		
1fo0A	116	76.71	b.1.1.1	20610
1w7cA	747	77.55		
2ioiA	201	79.92		
1h4xA	117	81.02	c.13.2.1	60626
1wleA	501	83.25		
2nutB	753	84.46		
1ygaA	342	85.15		
2biqA	219	86.75		
2psoA	237	88.12