# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2rfiA	285	2.30e-19		
3bo5A	290	2.70e-19		
2qpwA	149	3.15e-19		
1zkkA	167	3.24e-19		
2r3aA	300	5.62e-19		
2igqA	285	5.65e-19		
2o8jA	281	1.18e-18		
2f69A	261	3.62e-18	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	6.32e-18	b.85.7.1	79282
1n6aA	259	1.48e-17	b.76.2.1,b.85.7.1	80121,80122
1p0yA	444	1.37e-07	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	1.81e-07	a.166.1.1,b.85.7.3	135976,135977
2ag4A	164	2.219	b.95.1.1	126717
1lm5A	214	9.545	d.211.2.1	74029
1svb	395	12.07		
2pn1A	331	15.78		
1vm9A	111	18.41	b.33.1.1	108886
1vkkA	154	20.41	d.109.1.2	108669
1rutX	188	20.53	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
2dafA	118	22.07		
1lm7A	248	22.12	d.211.2.1	74031
2pcxA	220	22.63		
2bsyA	278	24.16	b.85.4.1,b.85.4.1	129129,129130
2bazA	142	29.42		
2p52A	196	31.05		
2biqA	219	37.62		
1l8fA	207	43.18	b.52.1.1	84537
2engA	210	44.34	b.52.1.1	26895
2psoA	237	46.04		
2f57A	317	46.09		
1wqjB	80	48.67		
1rzhH	260	50.20	b.41.1.1,f.23.10.1	98162,98163
2eng	210	52.55		
1s9rA	410	52.92	d.126.1.4	98758
1v8yA	170	53.42	d.113.1.1	113581
1xuuA	349	53.65	b.85.1.1,c.1.10.6	116067,116068
2zdrA	349	54.06		
1gpr	162	58.66		
1vliA	385	62.31	b.85.1.1,c.1.10.6	108830,108831
1munA	225	62.53	a.96.1.2	18744
2jz8A	87	62.57		
1dunA	134	62.73	b.85.4.1	28371
2ioiA	201	64.83		
2zbtA	297	67.99		
1uolA	219	68.04	b.2.5.2	99695
1h2wA	710	68.37	b.69.7.1,c.69.1.4	76596,76597
1zoyB	252	70.70		
2b79A	144	71.80		
2nutB	753	74.52		
1buuA	168	75.62	d.169.1.1,h.1.1.1	42366,45388
2jrrA	67	75.75		
2orzA	314	75.83		
2qsfA	533	77.18		
1dpoA	223	77.93	b.47.1.2	25975
1aipA	405	79.11	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
1qpcA	279	80.86	d.144.1.7	41685
1dv1A	449	81.52	b.84.2.1,c.30.1.1,d.142.1.2	28234,31641,41486
2i5nH	258	84.42	b.41.1.1,f.23.10.1	137064,137065
1h4xA	117	85.42	c.13.2.1	60626
1yhvA	297	88.71		
1vclA	432	88.72	b.42.2.1,b.42.2.1,d.281.1.1	108498,108499,108500
1zxuA	217	88.83	d.23.1.2	125796
1e2wA	251	89.90	b.2.6.1,b.84.2.2	22466,28252