# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	1.79e-21		
3bo5A	290	2.18e-21		
1zkkA	167	2.43e-21		
2rfiA	285	2.46e-21		
2igqA	285	4.75e-21		
2r3aA	300	5.75e-21		
2o8jA	281	1.65e-20		
2f69A	261	8.66e-20	b.76.2.1,b.85.7.1	133035,133036
1ml9A	302	8.76e-20	b.85.7.1	79282
1n6aA	259	3.71e-19	b.76.2.1,b.85.7.1	80121,80122
1p0yA	444	1.03e-08	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	2.47e-08	a.166.1.1,b.85.7.3	135976,135977
2ag4A	164	1.907	b.95.1.1	126717
1rutX	188	5.696	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1lm5A	214	9.331	d.211.2.1	74029
2dafA	118	11.00		
2bazA	142	11.20		
2pn1A	331	15.29		
2bsyA	278	15.36	b.85.4.1,b.85.4.1	129129,129130
1wqjB	80	15.36		
1svb	395	18.44		
1s9rA	410	23.81	d.126.1.4	98758
1vm9A	111	24.52	b.33.1.1	108886
1lm7A	248	25.99	d.211.2.1	74031
1vkkA	154	26.06	d.109.1.2	108669
1rzhH	260	26.21	b.41.1.1,f.23.10.1	98162,98163
2b79A	144	28.21		
1munA	225	34.07	a.96.1.2	18744
2pcxA	220	36.05		
1dunA	134	41.12	b.85.4.1	28371
2p52A	196	47.19		
1dv1A	449	48.36	b.84.2.1,c.30.1.1,d.142.1.2	28234,31641,41486
2zbtA	297	50.89		
1jpaA	312	51.31	d.144.1.7	67011
1v8yA	170	52.24	d.113.1.1	113581
1yj1A	76	54.07	k.45.1.1	123377
2gekA	406	54.45		
1l8fA	207	54.59	b.52.1.1	84537
1qpcA	279	55.08	d.144.1.7	41685
2f57A	317	55.20		
2psoA	237	56.32		
1eaqA	140	56.66	b.2.5.6	76144
2q4mA	217	60.93	d.23.1.2	139870
2engA	210	62.01	b.52.1.1	26895
1gpr	162	62.88		
1dxrH	258	62.94	b.41.1.1,f.23.10.1	25456,43433
2qsfA	533	66.91		
1ktgA	138	70.20	d.113.1.1	72972
2vphA	100	72.67		
1xuuA	349	74.07	b.85.1.1,c.1.10.6	116067,116068
2i5nH	258	74.29	b.41.1.1,f.23.10.1	137064,137065
1hg7A	66	75.63	b.85.1.1	28280
2nutB	753	75.66		
1vclA	432	77.83	b.42.2.1,b.42.2.1,d.281.1.1	108498,108499,108500
2eng	210	78.01		
1h4xA	117	79.66	c.13.2.1	60626
1s98A	107	82.12	b.124.1.1	105377
1aipA	405	83.52	b.43.3.1,b.44.1.1,c.37.1.8	25697,25737,32132
1oqjA	97	83.54	d.217.1.1	93417
2orzA	314	86.82		
2zdrA	349	86.99		
2jz8A	87	88.83