# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	1.89e-20		
2rfiA	285	1.99e-20		
1zkkA	167	6.28e-20		
2igqA	285	2.70e-19		
2r3aA	300	2.81e-19		
3bo5A	290	4.11e-19		
2o8jA	281	5.78e-19		
1ml9A	302	3.47e-18	b.85.7.1	79282
2f69A	261	8.97e-18	b.76.2.1,b.85.7.1	133035,133036
1n6aA	259	3.68e-17	b.76.2.1,b.85.7.1	80121,80122
1p0yA	444	2.69e-08	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	4.18e-08	a.166.1.1,b.85.7.3	135976,135977
2pn1A	331	1.882		
2ag4A	164	4.286	b.95.1.1	126717
2dafA	118	15.95		
1lm5A	214	19.39	d.211.2.1	74029
1vliA	385	19.89	b.85.1.1,c.1.10.6	108830,108831
1vkkA	154	32.75	d.109.1.2	108669
2bazA	142	34.20		
1dunA	134	40.02	b.85.4.1	28371
1q3oA	109	41.19	b.36.1.1	95700
1ixcA	294	43.66	a.4.5.37,c.94.1.1	83764,83765
2pcxA	220	45.25		
1vm9A	111	45.49	b.33.1.1	108886
1sixA	174	52.22	b.85.4.1	98892
2p52A	196	54.71		
1ki1B	352	56.83	a.87.1.1,b.55.1.1	72497,72498
2pa2A	151	56.95		
1ia8A	289	57.69	d.144.1.7	62112
1wqjB	80	63.73		
2vphA	100	67.28		
1qpcA	279	69.85	d.144.1.7	41685
1tkiA	321	70.09	d.144.1.7	41638
1f7dA	136	72.89	b.85.4.1	28353
1ygaA	342	78.94		
1zmoA	244	79.46		
1uu3A	310	79.82	d.144.1.7	99999
1r13A	148	80.01	d.169.1.1,h.1.1.1	96782,96783
1khtA	192	82.91	c.37.1.1	84401
1yreA	197	83.47	d.108.1.1	123919
1o6yA	299	83.68	d.144.1.7	81106
1eaqA	140	86.67	b.2.5.6	76144
1q5hA	147	89.92	b.85.4.1	95893