# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	1.36e-19		
1zkkA	167	3.28e-19		
2rfiA	285	4.43e-19		
3bo5A	290	5.35e-19		
2r3aA	300	1.33e-18		
2igqA	285	5.78e-18		
2o8jA	281	2.11e-17		
1ml9A	302	3.07e-17	b.85.7.1	79282
2f69A	261	8.03e-17	b.76.2.1,b.85.7.1	133035,133036
1n6aA	259	3.42e-16	b.76.2.1,b.85.7.1	80121,80122
1p0yA	444	1.01e-07	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	1.42e-06	a.166.1.1,b.85.7.3	135976,135977
2ag4A	164	5.043	b.95.1.1	126717
2bsyA	278	11.94	b.85.4.1,b.85.4.1	129129,129130
2pn1A	331	13.65		
1eaqA	140	16.73	b.2.5.6	76144
2igtA	332	18.01	c.66.1.51	137401
2p52A	196	18.26		
1lm5A	214	21.63	d.211.2.1	74029
2pcxA	220	21.65		
2czcA	334	24.78	d.81.1.1	131044
1q3oA	109	31.60	b.36.1.1	95700
2pa2A	151	34.41		
1yhvA	297	37.64		
1ygaA	342	37.95		
1dunA	134	38.34	b.85.4.1	28371
1gpr	162	38.35		
1ppjE	196	39.59	b.33.1.1,f.23.12.1	104260,104261
2f5yA	91	41.69	b.36.1.1	133015
2bibA	547	46.56	b.109.1.1,d.157.1.8	128581,128582
1svb	395	47.91		
1f3zA	161	48.42	b.84.3.1	28273
1hg7A	66	50.10	b.85.1.1	28280
2i1nA	102	53.64		
2jikA	101	54.85		
1munA	225	56.95	a.96.1.2	18744
2awxA	105	60.51		
1mfgA	95	63.78	b.36.1.1	79043
2ioiA	201	64.70		
1jugA	125	64.91	d.2.1.2	36587
2qecA	204	65.41		
2bfxA	284	65.62		
1ml4A	308	69.05	c.78.1.1,c.78.1.1	79255,79256
1lmqA	129	69.50	d.2.1.2	36588
2dafA	118	70.29		
1zuaX	317	70.52		
1ucsA	64	71.04	b.85.1.1	88466
1vliA	385	73.21	b.85.1.1,c.1.10.6	108830,108831
3cqbA	107	73.25		
1a2yC	129	73.83	d.2.1.2	36305
2ac0A	200	75.63	b.2.5.2	126539
1b7gO	340	76.04	c.2.1.3,d.81.1.1	29992,39907
1vkkA	154	76.86	d.109.1.2	108669
2vi7A	177	77.68		
2zdrA	349	78.46		
1qpcA	279	80.66	d.144.1.7	41685
2uzcA	88	83.21