# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 1.09e-15 1zkkA 167 2.79e-15 2r3aA 300 3.48e-15 2rfiA 285 1.13e-14 2o8jA 281 2.18e-14 2igqA 285 3.07e-14 3bo5A 290 3.25e-14 2f69A 261 3.00e-13 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 3.01e-13 b.76.2.1,b.85.7.1 80121,80122 1ml9A 302 3.22e-13 b.85.7.1 79282 1p0yA 444 0.001362 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 0.05830 a.166.1.1,b.85.7.3 135976,135977 2pktA 91 3.892 2q3gA 89 4.419 1q3oA 109 5.617 b.36.1.1 95700 2egoA 96 6.157 2uzcA 88 6.900 2f0aA 98 7.628 b.36.1.1 132661 2h00A 254 9.478 c.66.1.54 135925 2pa1A 87 9.567 2fcfA 103 9.880 b.36.1.1 133267 2h3lA 103 10.34 b.36.1.1 136046 1v4pA 157 11.09 d.67.1.2 113533 2vphA 100 12.28 2dvkA 188 12.67 1eaxA 241 12.89 b.47.1.2 64889 2iorA 235 13.74 2df7A 458 14.95 b.121.4.9 131449 1a1xA 108 14.99 b.63.1.1 27514 1x19A 359 15.40 2v3aA 384 15.51 1n7eA 97 16.33 b.36.1.1 91691 3bpuA 88 16.95 1a1x 108 18.41 2jilA 97 18.72 2ftsA 419 19.13 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2i1nA 102 19.36 2gzvA 114 21.47 1dusA 194 21.82 c.66.1.4 34182 2jikA 101 22.19 1nnwA 252 22.30 d.159.1.5 80674 2j58A 359 22.99 2z1aA 552 24.34 2qt5A 200 24.45 2fe5A 94 24.77 b.36.1.1 133323 2iwnA 97 24.80 1wosA 364 26.46 b.44.2.1,d.250.1.1 109468,109469 2gllA 171 26.61 2nqrA 411 26.98 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 2ocsA 88 28.51 2h36X 112 29.35 2h2bA 107 29.47 2ozfA 92 29.67 1wcdJ 441 29.80 b.121.4.9 120887 1ftpA 133 31.40 b.60.1.2 27199 1fnuA 221 32.13 b.40.2.2,d.15.6.1 25212,37801 1x45A 98 32.31 b.36.1.1 121679 2q9vA 90 32.51 2qkvA 96 32.63 1jg5A 83 34.21 d.205.1.1 66666 1z2wA 192 34.56 d.159.1.7 124390 2awxA 105 35.60 1qusA 322 36.69 d.2.1.6 36991 2b4vA 468 38.12 a.160.1.4,d.218.1.10 127864,127865 1kwaA 88 38.44 b.36.1.1 24772 1qzzA 374 38.77 a.4.5.29,c.66.1.12 96719,96720 4dpvZ 584 39.94 b.121.5.2 23377 1mfgA 95 40.18 b.36.1.1 79043 1a34A 159 40.69 b.121.7.1 23286 2iwoA 120 41.84 1qavA 90 42.20 b.36.1.1 24777 2pcsA 162 42.43 2i04A 85 42.52 2cbiA 594 43.15 a.246.1.1,c.1.8.10,d.92.2.3 130179,130180,130181 1o8vA 134 44.32 b.60.1.2 86680 1ihjA 98 44.40 b.36.1.1 62382 1xbbA 291 45.01 d.144.1.7 115077 2ns9A 157 45.19 1g8lA 411 45.89 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1ve3A 227 46.09 c.66.1.43 120010 2v90A 96 46.37 1rkqA 282 48.51 c.108.1.10 97621 2rczA 81 48.87 1uz5A 402 48.95 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1r6jA 82 49.82 b.36.1.1 97151 2r6vA 191 51.26 1qr0A 228 51.72 d.150.1.1,d.150.1.1 59038,59039 2qg1A 92 52.17 2evbA 74 53.32 2ol1A 147 53.32 2f9hA 129 54.98 b.161.1.1 133162 2r9qA 370 55.65 1z6bA 154 56.01 d.38.1.6 124510 2f5yA 91 56.44 b.36.1.1 133015 2j85A 122 56.94 d.321.1.1 138133 1pj5A 830 57.45 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 2f0xA 148 57.61 d.38.1.5 132673 2ip2A 334 58.30 1wf7A 103 58.49 b.36.1.1 114577 1ikoP 178 58.71 b.6.1.5 71243 2vsmB 140 59.01 2b79A 144 59.14 1e42A 258 59.59 b.1.10.1,d.105.1.1 22316,40792 2fmlA 273 59.60 a.4.5.68,d.113.1.6 133778,133779 3cp0A 82 59.97 2eb4A 267 60.64 2he4A 90 61.38 1jpaA 312 61.55 d.144.1.7 67011 2nqtA 352 61.96 2ozpA 345 64.00 1lshA 1056 64.53 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2geyA 158 65.52 1nf3C 128 66.31 b.36.1.1 85596 2asbA 251 66.37 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 2a6hC 1119 69.35 e.29.1.1 126264 1vh0A 161 70.37 c.116.1.3 100626 1hmt 132 70.73 1mdbA 539 71.97 e.23.1.1 79008 1g9oA 91 72.36 b.36.1.1 60400 2r3sA 335 73.47 1tp5A 119 73.72 b.36.1.1 119305 2opgA 98 74.37 1mkaA 171 76.58 d.38.1.2 38543 3choA 610 79.46 1vknA 351 80.95 c.2.1.3,d.81.1.1 108676,108677 1em2A 229 83.30 d.129.3.2 41321 2reyA 100 83.54 1gqiA 708 86.19 c.1.8.10,d.92.2.2 76279,76280