# List of top-scoring protein chains for TR435.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2o8jA 281 6.51e-23 2rfiA 285 1.71e-22 2r3aA 300 7.55e-21 1mvhA 299 1.01e-19 b.85.7.1 79500 3bo5A 290 3.31e-19 2bqzA 161 2.25e-18 1zkkA 167 2.53e-18 2qpwA 149 1.61e-17 2jv0A 163 2.18e-17 1ml9A 302 2.68e-17 b.85.7.1 79282 1n3jA 119 2.47e-11 b.85.7.2 79963 3cbpA 256 8.05e-09 1n6aA 259 8.48e-09 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 8.85e-09 b.76.2.1,b.85.7.1 133035,133036 1xqhA 264 8.98e-09 b.76.2.1,b.85.7.1 115846,115847 1n6cA 297 1.26e-08 b.76.2.1,b.85.7.1 80123,80124 1h3iA 293 1.98e-08 b.76.2.1,b.85.7.1 76635,76636 1mufA 257 6.83e-08 b.76.2.1,b.85.7.1 79483,79484 1mt6A 280 8.32e-08 b.76.2.1,b.85.7.1 79446,79447 1x7aC 235 2.346 b.47.1.2 121781 2gfiA 458 2.556 1mmqA 170 3.352 d.92.1.11 40396 2ddyA 173 3.385 d.92.1.11 131408 2bwjA 199 7.686 1rlyA 60 13.23 g.41.3.1 104988 1dl6A 58 13.84 g.41.3.1 45207 1b9rA 105 14.51 d.15.4.1 37683 1id2A 106 14.58 b.6.1.1 62288 2rgxA 206 15.28 1ovyA 120 15.77 c.55.4.1 93624 2bmaA 470 16.05 1qibA 161 16.24 d.92.1.11 40359 2h21A 440 20.41 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 20.58 a.166.1.1,b.85.7.3 87654,87655 1ta3B 303 23.61 c.1.8.3 106732 1b43A 340 25.12 a.60.7.1,c.120.1.2 18092,33362 2gkpA 167 25.29 1dqgA 135 28.09 b.42.2.2 25579 2fu5C 183 28.19 c.37.1.8 134104 1fwuA 134 28.54 b.42.2.2 25580 2ia0A 171 28.94 1z0fA 179 29.97 c.37.1.8 124313 2rjnA 154 30.45 1co1A 115 31.00 b.2.5.6 22463 1hjcA 123 31.45 b.2.5.6 61079 2aedA 181 32.50 c.37.1.8 126619 1ljmA 131 33.06 b.2.5.6 78051 1h9dA 134 33.30 b.2.5.6 60821 2cw3A 280 33.91 1cmoA 127 36.24 b.2.5.6 22462 1eaqA 140 36.96 b.2.5.6 76144 1oxsC 353 39.36 b.40.6.3,c.37.1.12 87519,87520 1oxxK 353 39.66 b.40.6.3,c.37.1.12 93715,93716 2j6wA 140 39.88 2qgpA 112 40.06 3c26A 266 40.42 1w1wA 430 45.21 c.37.1.12 114080 2f2aB 483 46.33 a.182.1.2,d.128.1.5 132802,132803 2yrvA 117 46.54 2o1rA 81 50.51 1gprA 162 51.53 b.84.3.1 28267 2g7zA 282 52.26 1oi0A 124 53.81 c.97.3.1 93045 1p4sA 181 55.46 c.37.1.1 94117 2cdnA 201 58.28 c.37.1.1 130289 1eakA 421 58.55 a.20.1.2,d.92.1.11,g.14.1.2,g.14.1.2,g.14.1.2 70093,70094,70095,70096,70097 2uz5A 137 58.69 1vypX 364 59.43 c.1.4.1 108905 1zysA 273 59.53 1r5xA 133 59.77 c.97.3.1 97132 1ukzA 203 59.96 c.37.1.1 31840 2zjuA 214 60.33 2ekmA 162 61.34 2ahnA 222 62.04 2pwzA 312 62.17 c.2.1.5,d.162.1.1 139766,139767 1vyrA 364 62.42 c.1.4.1 108906 1uv6A 210 62.91 b.96.1.1 100030 1u1iA 392 63.03 c.2.1.3,d.81.1.3 107582,107583 1vysX 364 63.41 c.1.4.1 108907 1uw6A 211 63.62 b.96.1.1 100079 1ux2A 212 64.07 b.96.1.1 100132 2abbA 364 65.34 c.1.4.1 126517 2dafA 118 65.93 2jxlA 89 66.04 1i9bA 217 66.22 b.96.1.1 62084 1tevA 196 67.99 c.37.1.1 106817 1fx8A 281 69.31 f.19.1.1 43651 2gz6A 388 70.47 1bwuQ 109 72.81 b.78.1.1 27996 1ap4A 89 77.44 a.39.1.5 17253 1qpwB 146 79.79 a.1.1.2 15569 1kj1D 109 79.82 b.78.1.1 68639 2nv4A 147 83.27 2b9wA 424 83.80 2b44A 133 85.33 2b0pA 134 85.45 1r2uA 89 88.58 a.39.1.5 104783 2ao3A 130 88.92