# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r3aA 300 2.67e-28 2qpwA 149 4.23e-28 1n6aA 259 5.03e-27 b.76.2.1,b.85.7.1 80121,80122 3bo5A 290 5.24e-27 2f69A 261 5.72e-27 b.76.2.1,b.85.7.1 133035,133036 2rfiA 285 8.29e-27 1zkkA 167 9.65e-27 2o8jA 281 1.00e-26 1ml9A 302 1.79e-26 b.85.7.1 79282 2igqA 285 2.32e-26 1n3jA 119 2.53e-20 b.85.7.2 79963 1p0yA 444 5.38e-13 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 2.04e-12 a.166.1.1,b.85.7.3 135976,135977 1lm5A 214 1.905 d.211.2.1 74029 1lm7A 248 2.658 d.211.2.1 74031 1h9dA 134 4.834 b.2.5.6 60821 1f7dA 136 7.870 b.85.4.1 28353 1mq7A 154 8.153 b.85.4.1 79404 1fvrA 327 8.627 d.144.1.7 60047 2ag9A 164 10.69 1gky 187 11.92 2ag4A 164 12.45 b.95.1.1 126717 1v6fA 151 13.78 d.109.1.2 108395 2bsyA 278 14.70 b.85.4.1,b.85.4.1 129129,129130 1qf9A 194 15.32 c.37.1.1 31848 2oemA 413 15.74 1txkA 498 15.82 b.1.18.2,b.30.5.9 107425,107426 1abrB 267 15.93 b.42.2.1,b.42.2.1 25563,25564 2psoA 237 16.91 1gpr 162 17.07 2a6aA 218 18.34 c.55.1.9,c.55.1.9 126231,126232 2f5yA 91 18.49 b.36.1.1 133015 2q3gA 89 22.29 1jv4A 162 23.03 b.60.1.1 67343 2vphA 100 23.04 2v90A 96 23.45 1eaqA 140 24.18 b.2.5.6 76144 2ocsA 88 24.92 2ozfA 92 26.39 1uasA 362 28.10 b.71.1.1,c.1.8.1 88388,88389 1rutX 188 28.12 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2pcxA 220 29.39 1sixA 174 29.74 b.85.4.1 98892 1g8kB 133 29.99 b.33.1.1 24435 1vlyA 338 30.79 b.44.2.1,d.250.1.1 108871,108872 1f7sA 139 30.95 d.109.1.2 40857 3cqbA 107 31.36 1dunA 134 32.34 b.85.4.1 28371 1m40A 263 32.44 e.3.1.1 74437 1be9A 119 32.69 b.36.1.1 24774 1nmoA 247 32.87 c.135.1.1 91980 2p52A 196 33.17 1ybiA 288 33.72 2pa1A 87 34.31 1tuc 63 34.32 2pktA 91 34.79 2ohcA 289 35.27 1a2vA 655 37.15 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 2i5oA 39 38.64 1vmeA 410 39.24 c.23.5.1,d.157.1.3 108893,108894 1r94A 118 41.41 b.124.1.1 97251 1fvuB 125 43.61 d.169.1.1 42346 2b0vA 153 43.90 d.113.1.1 127650 1v5lA 103 44.36 b.36.1.1 108378 1u1zA 168 45.70 d.38.1.6 107602 1gprA 162 45.83 b.84.3.1 28267 2fwvA 226 46.23 1n7eA 97 48.09 b.36.1.1 91691 2fazA 78 48.56 d.15.1.1 133223 1zsoA 164 48.63 b.166.1.1 125610 2ac0A 200 49.00 b.2.5.2 126539 1tp5A 119 49.14 b.36.1.1 119305 1fl2A 310 49.18 c.3.1.5,c.3.1.5 59869,59870 2qg1A 92 51.13 2zdrA 349 51.32 1s98A 107 52.06 b.124.1.1 105377 1xl7A 612 52.52 c.43.1.3,c.43.1.3 115438,115439 2qntA 141 53.00 1v7pB 128 54.46 d.169.1.1 108407 2prvA 153 54.50 2htaA 309 55.45 2ol1A 147 55.85 2zbtA 297 56.64 1wf7A 103 56.88 b.36.1.1 114577 2qkvA 96 57.67 1onqA 283 58.06 b.1.1.2,d.19.1.1 93365,93366 3cebA 194 58.20 1genA 218 58.56 b.66.1.1 27536 2yzuA 109 59.19 1knmA 130 59.48 b.42.2.1 72781 1jwiB 125 60.63 d.169.1.1 67384 2i1nA 102 62.61 1rlyA 60 62.95 g.41.3.1 104988 2cvkA 110 63.93 1y97A 238 64.30 c.55.3.5 122773 1qstA 160 64.56 d.108.1.1 40804 1nrgA 261 65.35 b.45.1.1 80694 1s31A 273 67.66 1gcqA 61 67.72 b.34.2.1 60434 2egoA 96 67.86 1qxrA 189 68.19 b.82.1.7 96552 1q5hA 147 68.25 b.85.4.1 95893 1te5A 257 70.98 d.153.1.1 106795 1semA 58 71.57 b.34.2.1 24544 2fe5A 94 72.86 b.36.1.1 133323 1nf3C 128 73.87 b.36.1.1 85596 1hs6A 611 76.30 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1g9oA 91 77.78 b.36.1.1 60400 1qexA 288 78.00 b.32.1.1 24425 1swvA 267 78.00 c.108.1.3 112134 2eng 210 79.00 2e0qA 104 79.24 2j21A 219 79.26 1oqyA 368 79.53 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1thxA 115 80.21 c.47.1.1 32732 2agcA 162 81.42 1sqhA 312 82.33 d.108.1.5 98966 1nwbA 124 82.58 b.124.1.1 86296 2jixB 225 83.18 1fezA 256 83.84 c.108.1.3 43343 2iorA 235 84.04 2debA 653 84.22 1uliA 460 85.26 b.33.1.2,d.129.3.3 107921,107922 2he4A 90 85.39 2bkrA 212 86.24 d.3.1.7 128710 1tzfA 259 86.75 c.68.1.13 107476 2j43A 219 88.34 2he2A 102 88.82 2jikA 101 89.55 2uzcA 88 89.57 1twfK 120 89.59 d.74.3.2 112736