# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r3aA 300 1.33e-30 2qpwA 149 9.36e-30 1n6aA 259 1.55e-29 b.76.2.1,b.85.7.1 80121,80122 3bo5A 290 2.05e-29 2f69A 261 2.74e-29 b.76.2.1,b.85.7.1 133035,133036 2rfiA 285 4.70e-29 2o8jA 281 6.45e-29 1ml9A 302 8.41e-29 b.85.7.1 79282 1zkkA 167 8.87e-29 2igqA 285 1.21e-28 1n3jA 119 6.79e-22 b.85.7.2 79963 1p0yA 444 1.75e-13 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 2.30e-13 a.166.1.1,b.85.7.3 135976,135977 1lm7A 248 2.966 d.211.2.1 74031 1v6fA 151 3.921 d.109.1.2 108395 1lm5A 214 4.343 d.211.2.1 74029 1h9dA 134 5.511 b.2.5.6 60821 1gky 187 6.312 1fvrA 327 6.998 d.144.1.7 60047 2ag9A 164 7.469 2ag4A 164 8.564 b.95.1.1 126717 1mq7A 154 10.70 b.85.4.1 79404 1f7dA 136 10.88 b.85.4.1 28353 2psoA 237 13.51 1f7sA 139 14.16 d.109.1.2 40857 2pcxA 220 16.32 2p52A 196 17.52 2bsyA 278 17.85 b.85.4.1,b.85.4.1 129129,129130 2oemA 413 19.25 1qf9A 194 19.30 c.37.1.1 31848 2v90A 96 20.78 1abrB 267 21.86 b.42.2.1,b.42.2.1 25563,25564 2vphA 100 22.75 1uasA 362 22.82 b.71.1.1,c.1.8.1 88388,88389 1ybiA 288 24.49 1r94A 118 25.66 b.124.1.1 97251 1s98A 107 26.12 b.124.1.1 105377 2iyaA 424 26.75 1jv4A 162 26.79 b.60.1.1 67343 1gpr 162 27.56 1a2vA 655 28.56 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 2q3gA 89 29.56 2prvA 153 30.84 2b0vA 153 31.46 d.113.1.1 127650 1rutX 188 31.65 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2agcA 162 31.94 1v5lA 103 33.55 b.36.1.1 108378 2i5oA 39 33.70 2zbvA 263 34.64 2ocsA 88 34.99 1qexA 288 36.33 b.32.1.1 24425 1tuc 63 36.79 3cqbA 107 36.84 2ozfA 92 36.84 1fl2A 310 37.83 c.3.1.5,c.3.1.5 59869,59870 1g8kB 133 38.12 b.33.1.1 24435 1vlyA 338 38.96 b.44.2.1,d.250.1.1 108871,108872 2j43A 219 40.08 1sixA 174 40.37 b.85.4.1 98892 2pktA 91 40.68 1eaqA 140 40.86 b.2.5.6 76144 2yzuA 109 44.94 2ohcA 289 45.22 1xl7A 612 46.30 c.43.1.3,c.43.1.3 115438,115439 1y97A 238 46.85 c.55.3.5 122773 1fvuB 125 47.18 d.169.1.1 42346 1cl8A 276 47.91 c.52.1.1 33230 2ac0A 200 48.89 b.2.5.2 126539 2j21A 219 49.52 1thxA 115 49.62 c.47.1.1 32732 2pa1A 87 49.65 1t46A 313 50.18 d.144.1.7 106397 2egoA 96 50.98 2zbtA 297 51.05 1vmeA 410 51.31 c.23.5.1,d.157.1.3 108893,108894 1gcqA 61 52.78 b.34.2.1 60434 2ioiA 201 53.02 2ox0A 381 53.68 2rczA 81 54.88 1dunA 134 55.30 b.85.4.1 28371 1oqyA 368 55.37 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1semA 58 56.60 b.34.2.1 24544 1ov3A 138 60.89 b.34.2.1,b.34.2.1 87451,87452 1n7eA 97 61.53 b.36.1.1 91691 1k0rA 366 62.36 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 1eo9A 209 63.52 b.3.6.1 22731 2cvkA 110 64.02 2e0qA 104 64.31 1uwcA 261 64.40 c.69.1.17 100101 2htaA 309 66.33 2qntA 141 66.46 1v7pB 128 66.60 d.169.1.1 108407 1inlA 296 67.44 c.66.1.17 66220 2qg1A 92 67.78 1jwiB 125 69.42 d.169.1.1 67384 1u1zA 168 70.08 d.38.1.6 107602 1r0uA 148 70.70 b.60.1.5 96741 1y4wA 518 70.81 b.29.1.19,b.67.2.3 116470,116471 2fe5A 94 70.92 b.36.1.1 133323 1m4jA 142 70.93 d.109.1.2 78602 1q5hA 147 71.00 b.85.4.1 95893 2f5yA 91 71.05 b.36.1.1 133015 1mmqA 170 71.29 d.92.1.11 40396 1sqhA 312 71.89 d.108.1.5 98966 1hq8A 123 72.39 d.169.1.1 61127 1utiA 58 73.55 b.34.2.1 99962 1onqA 283 74.54 b.1.1.2,d.19.1.1 93365,93366 2ol1A 147 75.32 1s31A 273 75.64 1gprA 162 76.67 b.84.3.1 28267 1dwkA 156 77.33 a.35.1.4,d.72.1.1 17075,39606 1txkA 498 77.90 b.1.18.2,b.30.5.9 107425,107426 1q40B 219 77.94 d.17.4.2 95771 1n2aA 201 78.29 a.45.1.1,c.47.1.5 91553,91554 2fwvA 226 78.87 2bz8A 58 78.95 1qstA 160 80.51 d.108.1.1 40804 1a0fA 201 81.02 a.45.1.1,c.47.1.5 17737,33031 1te5A 257 81.42 d.153.1.1 106795 1knmA 130 81.75 b.42.2.1 72781 2fazA 78 81.82 d.15.1.1 133223 2oynA 146 82.94 2opgA 98 83.47 1oebA 62 84.50 b.34.2.1 86909 1be9A 119 84.68 b.36.1.1 24774 1hh2P 344 85.52 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1nwbA 124 85.57 b.124.1.1 86296 1zx6A 58 85.97 2hq7A 146 86.58 b.45.1.1 136657 1grjA 158 88.10 a.2.1.1,d.26.1.2 15691,38433 1dyoA 160 88.26 b.18.1.7 23771