# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r3aA 300 6.20e-30 2qpwA 149 5.35e-29 2f69A 261 7.72e-29 b.76.2.1,b.85.7.1 133035,133036 3bo5A 290 8.75e-29 1n6aA 259 1.09e-28 b.76.2.1,b.85.7.1 80121,80122 2o8jA 281 2.21e-28 2rfiA 285 2.38e-28 2igqA 285 3.86e-28 1zkkA 167 4.86e-28 1ml9A 302 5.87e-28 b.85.7.1 79282 1n3jA 119 9.61e-21 b.85.7.2 79963 2h21A 440 1.46e-13 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 2.46e-13 a.166.1.1,b.85.7.3 87654,87655 1lm5A 214 1.136 d.211.2.1 74029 1lm7A 248 1.274 d.211.2.1 74031 1nwbA 124 2.297 b.124.1.1 86296 1l8fA 207 3.632 b.52.1.1 84537 2eng 210 3.666 1qf9A 194 6.707 c.37.1.1 31848 2engA 210 6.966 b.52.1.1 26895 2yzuA 109 7.623 1v6fA 151 7.932 d.109.1.2 108395 2cvkA 110 7.964 1gky 187 8.225 2ozfA 92 8.311 2vphA 100 8.518 2e0qA 104 8.698 1mq7A 154 10.30 b.85.4.1 79404 2q3gA 89 10.57 1sixA 174 11.06 b.85.4.1 98892 1f7dA 136 11.34 b.85.4.1 28353 2pktA 91 12.01 2ag9A 164 12.19 1r94A 118 12.53 b.124.1.1 97251 2ag4A 164 12.59 b.95.1.1 126717 1txkA 498 12.71 b.1.18.2,b.30.5.9 107425,107426 2v90A 96 14.02 1v5lA 103 14.05 b.36.1.1 108378 2bsyA 278 14.91 b.85.4.1,b.85.4.1 129129,129130 1u1zA 168 16.12 d.38.1.6 107602 1n7eA 97 16.17 b.36.1.1 91691 2zbtA 297 16.28 2i6gA 199 16.56 c.66.1.44 137096 2ohcA 289 16.64 1s98A 107 18.26 b.124.1.1 105377 2rczA 81 19.42 1abrB 267 19.59 b.42.2.1,b.42.2.1 25563,25564 2de6A 392 19.67 b.33.1.2,d.129.3.3 131415,131416 1g8kB 133 20.50 b.33.1.1 24435 2q3wA 111 20.68 b.33.1.1 139813 2p52A 196 21.49 1a2vA 655 22.11 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 2gh1A 301 22.84 c.66.1.49 135170 2ocsA 88 23.37 2huhA 147 23.39 1be9A 119 23.61 b.36.1.1 24774 1rutX 188 23.85 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2psoA 237 24.04 1h9dA 134 24.07 b.2.5.6 60821 2yzrA 330 24.07 2qg1A 92 24.61 2prvA 153 24.62 2ox0A 381 25.66 2ffuA 501 25.79 1xl7A 612 26.19 c.43.1.3,c.43.1.3 115438,115439 1fvrA 327 26.54 d.144.1.7 60047 2i5oA 39 26.78 1gpr 162 27.54 1thxA 115 27.66 c.47.1.1 32732 1a8lA 226 28.13 c.47.1.2,c.47.1.2 32777,32778 2de6D 115 28.55 1m40A 263 30.47 e.3.1.1 74437 2pa1A 87 32.38 2egoA 96 32.48 1q5hA 147 32.66 b.85.4.1 95893 2rgxA 206 33.84 2he4A 90 35.20 1xuuA 349 35.67 b.85.1.1,c.1.10.6 116067,116068 2drmA 58 36.13 2he2A 102 36.27 2pcxA 220 36.70 1g9oA 91 37.42 b.36.1.1 60400 1r0uA 148 37.96 b.60.1.5 96741 1qavA 90 40.26 b.36.1.1 24777 1te5A 257 40.59 d.153.1.1 106795 1knmA 130 40.90 b.42.2.1 72781 1qcsA 211 41.09 b.52.2.3,d.31.1.1 26927,38461 1f7sA 139 41.55 d.109.1.2 40857 2ol1A 147 42.06 1tz9A 367 42.29 c.1.15.6 107466 1wf7A 103 42.58 b.36.1.1 114577 1ybyA 215 42.62 2b0vA 153 43.51 d.113.1.1 127650 1eaqA 140 43.80 b.2.5.6 76144 1nmoA 247 44.72 c.135.1.1 91980 2debA 653 46.39 2oe3A 114 47.82 1y97A 238 47.99 c.55.3.5 122773 1v7pB 128 48.47 d.169.1.1 108407 2g6fX 59 48.66 1sz6B 263 49.27 b.42.2.1,b.42.2.1 112172,112173 3cqbA 107 50.41 2ak5A 64 51.12 1m4jA 142 52.48 d.109.1.2 78602 1pwgA 349 52.48 e.3.1.1 104340 1t46A 313 53.62 d.144.1.7 106397 2i7fA 108 53.90 1ihjA 98 54.16 b.36.1.1 62382 1j2lA 70 54.41 g.20.1.1 90787 1jqeA 292 54.48 c.66.1.19 71789 1jwiB 125 54.80 d.169.1.1 67384 2uzcA 88 54.92 1gcqA 61 55.58 b.34.2.1 60434 1oqyA 368 56.09 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1tp5A 119 56.09 b.36.1.1 119305 1z0rA 53 57.05 b.129.1.3 124326 2opgA 98 57.32 1oebA 62 58.53 b.34.2.1 86909 1vyqA 173 58.56 b.85.4.1 120548 2bazA 142 58.99 1xjvA 294 59.62 b.40.4.3,b.40.4.3 115396,115397 1fl2A 310 60.35 c.3.1.5,c.3.1.5 59869,59870 1qxrA 189 61.30 b.82.1.7 96552 1nf3C 128 61.38 b.36.1.1 85596 1mfgA 95 62.50 b.36.1.1 79043 1zx6A 58 63.08 1qq5A 253 63.29 c.108.1.1 43327 1vm9A 111 65.15 b.33.1.1 108886 1znwA 207 66.01 c.37.1.1 125412 3pte 349 66.24 1nw2A 105 66.26 c.47.1.1 92215 2iwnA 97 66.27 2ac0A 200 67.39 b.2.5.2 126539 2f8lA 344 67.73 c.66.1.45 133132 1gprA 162 68.01 b.84.3.1 28267 1u8fO 335 68.38 c.2.1.3,d.81.1.1 119626,119627 1ubi 76 69.60 2jilA 97 69.86 2zbvA 263 70.10 2vm1A 118 71.24 1tp9A 162 71.26 c.47.1.10 119306 1f9mA 112 72.30 c.47.1.1 32736 2ggtA 164 72.88 c.47.1.10 135156 2qkvA 96 73.60 1zlmA 58 73.83 1grjA 158 74.80 a.2.1.1,d.26.1.2 15691,38433 2agcA 162 74.81 2sakA 121 75.81 d.15.5.1 37711 2pk3A 321 78.22 1gkpA 458 78.31 b.92.1.3,c.1.9.6 70231,70232 1utiA 58 80.33 b.34.2.1 99962 1wluA 136 81.24 d.38.1.5 121015 2h4tA 626 81.27 1e6cA 173 81.79 c.37.1.2 59296 1jv4A 162 82.07 b.60.1.1 67343 3cebA 194 82.35 2h3lA 103 82.78 b.36.1.1 136046 1y0mA 61 83.18 2jikA 101 83.32 1ywpA 64 83.85 2p9oA 169 83.98 1ybiA 288 85.00 1fb6A 105 85.29 c.47.1.1 32739 2gzvA 114 85.41 2vluA 122 86.21 1d8wA 426 86.25 c.1.15.2 29394 1ov3A 138 87.06 b.34.2.1,b.34.2.1 87451,87452 2aaiB 262 87.10 b.42.2.1,b.42.2.1 25561,25562 2e4qA 109 87.86 2cmgA 262 88.12 1tuc 63 88.30 1havA 217 88.48 b.47.1.4 26423 1kwaA 88 88.72 b.36.1.1 24772 2h2bA 107 89.32