# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r3aA 300 8.51e-33 2qpwA 149 1.26e-32 2f69A 261 3.48e-32 b.76.2.1,b.85.7.1 133035,133036 3bo5A 290 1.80e-31 1n6aA 259 2.91e-31 b.76.2.1,b.85.7.1 80121,80122 2rfiA 285 2.95e-31 1zkkA 167 3.29e-31 2igqA 285 7.74e-31 1ml9A 302 8.94e-31 b.85.7.1 79282 2o8jA 281 1.67e-30 1n3jA 119 1.11e-23 b.85.7.2 79963 2h21A 440 3.61e-15 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 9.31e-15 a.166.1.1,b.85.7.3 87654,87655 1lm7A 248 1.576 d.211.2.1 74031 1lm5A 214 1.758 d.211.2.1 74029 1v6fA 151 5.157 d.109.1.2 108395 2oemA 413 5.635 1mq7A 154 7.688 b.85.4.1 79404 1gky 187 8.342 1f7dA 136 8.786 b.85.4.1 28353 1h9dA 134 8.882 b.2.5.6 60821 2p52A 196 9.240 2pcxA 220 9.558 2ag9A 164 10.37 1uasA 362 11.10 b.71.1.1,c.1.8.1 88388,88389 2ag4A 164 11.46 b.95.1.1 126717 2ac0A 200 11.57 b.2.5.2 126539 1abrB 267 13.87 b.42.2.1,b.42.2.1 25563,25564 2zbtA 297 14.98 2iyaA 424 15.74 1jv4A 162 19.27 b.60.1.1 67343 2j21A 219 19.97 1qf9A 194 20.15 c.37.1.1 31848 2bsyA 278 20.17 b.85.4.1,b.85.4.1 129129,129130 1f7sA 139 20.97 d.109.1.2 40857 1g8kB 133 22.46 b.33.1.1 24435 2zdrA 349 23.31 1uliA 460 23.96 b.33.1.2,d.129.3.3 107921,107922 1gpr 162 24.87 1m40A 263 24.90 e.3.1.1 74437 2de6D 115 27.20 2prvA 153 28.06 2ioiA 201 30.98 2cmgA 262 32.71 2cvkA 110 34.13 2psoA 237 34.75 1sixA 174 35.43 b.85.4.1 98892 2yzuA 109 35.86 1l1zA 274 37.00 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1s31A 273 37.69 2eng 210 37.70 2ozfA 92 39.14 1hq8A 123 40.70 d.169.1.1 61127 1ybiA 288 40.97 1l8fA 207 42.65 b.52.1.1 84537 3pte 349 44.55 1gbg 214 44.70 1fvrA 327 45.61 d.144.1.7 60047 1eaqA 140 46.14 b.2.5.6 76144 1znwA 207 46.34 c.37.1.1 125412 2q3gA 89 46.77 1nwbA 124 47.32 b.124.1.1 86296 2iuyA 342 47.97 1knmA 130 48.20 b.42.2.1 72781 1v7pB 128 48.22 d.169.1.1 108407 1r94A 118 49.63 b.124.1.1 97251 2i5oA 39 51.41 1cl8A 276 51.52 c.52.1.1 33230 2v90A 96 52.31 2e0qA 104 52.87 2agcA 162 53.30 3b3fA 341 54.35 2a6aA 218 55.83 c.55.1.9,c.55.1.9 126231,126232 1wl7A 312 56.43 b.67.2.1 120996 1fezA 256 56.49 c.108.1.3 43343 2ch8A 201 56.70 2vphA 100 56.87 1jwiB 125 57.48 d.169.1.1 67384 2v74B 346 57.77 1gprA 162 58.11 b.84.3.1 28267 1a2vA 655 58.89 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 2gh1A 301 59.77 c.66.1.49 135170 1dunA 134 59.90 b.85.4.1 28371 1xj4A 119 60.08 d.110.3.2 122027 2nv1A 305 60.98 2i7fA 108 61.33 2zbvA 263 61.51 3cqbA 107 61.85 1qcsA 211 62.55 b.52.2.3,d.31.1.1 26927,38461 3cebA 194 63.07 2fazA 78 63.08 d.15.1.1 133223 1pwgA 349 63.40 e.3.1.1 104340 1xuuA 349 63.82 b.85.1.1,c.1.10.6 116067,116068 1qstA 160 64.22 d.108.1.1 40804 1k6wA 426 64.35 b.92.1.2,c.1.9.5 68236,68237 1v5lA 103 65.47 b.36.1.1 108378 1xl7A 612 66.97 c.43.1.3,c.43.1.3 115438,115439 2engA 210 67.62 b.52.1.1 26895 1icmA 131 68.06 b.60.1.2 27174 1sh7A 284 68.31 1qxrA 189 68.69 b.82.1.7 96552 1s98A 107 69.32 b.124.1.1 105377 1fvuB 125 69.79 d.169.1.1 42346 2yzrA 330 69.82 2pktA 91 70.17 1thxA 115 70.49 c.47.1.1 32732 1jj2B 337 71.86 b.43.3.2 63086 1nslA 184 74.08 d.108.1.1 86137 1oqyA 368 75.05 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1vr3A 191 76.00 b.82.1.6 120431 1onqA 283 76.09 b.1.1.2,d.19.1.1 93365,93366 1cpnA 208 77.29 b.29.1.2 24175 1gln 468 77.49 2ocsA 88 77.66 1wmzA 140 78.38 d.169.1.1 109422 1sqhA 312 78.53 d.108.1.5 98966 1y4wA 518 79.45 b.29.1.19,b.67.2.3 116470,116471 1ifcA 132 79.92 b.60.1.2 27173 2b0vA 153 80.18 d.113.1.1 127650 1eo9A 209 80.29 b.3.6.1 22731 1tz9A 367 80.48 c.1.15.6 107466 1jqeA 292 81.41 c.66.1.19 71789 1tuc 63 81.48 2i6gA 199 81.50 c.66.1.44 137096 2fb2A 340 82.12 1u8fO 335 82.22 c.2.1.3,d.81.1.1 119626,119627 1tzfA 259 82.94 c.68.1.13 107476 1swvA 267 83.07 c.108.1.3 112134 1fl2A 310 83.79 c.3.1.5,c.3.1.5 59869,59870 3cbwA 353 84.00 1uwcA 261 84.20 c.69.1.17 100101 1qexA 288 84.23 b.32.1.1 24425 1m4jA 142 84.47 d.109.1.2 78602 2qntA 141 85.95 1txkA 498 87.43 b.1.18.2,b.30.5.9 107425,107426 1q5hA 147 88.63 b.85.4.1 95893 2jz8A 87 89.58