# List of top-scoring protein chains for t04-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r3aA 300 8.14e-34 2qpwA 149 2.87e-33 2f69A 261 7.59e-33 b.76.2.1,b.85.7.1 133035,133036 3bo5A 290 3.16e-32 2rfiA 285 4.66e-32 1n6aA 259 4.68e-32 b.76.2.1,b.85.7.1 80121,80122 1zkkA 167 6.39e-32 1ml9A 302 1.14e-31 b.85.7.1 79282 2igqA 285 1.22e-31 2o8jA 281 1.72e-31 1n3jA 119 4.72e-24 b.85.7.2 79963 2h21A 440 8.64e-16 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 1.37e-14 a.166.1.1,b.85.7.3 87654,87655 1lm5A 214 0.9883 d.211.2.1 74029 1lm7A 248 1.174 d.211.2.1 74031 1v6fA 151 6.423 d.109.1.2 108395 2zbtA 297 7.553 2oemA 413 7.907 1gky 187 9.010 1f7dA 136 9.046 b.85.4.1 28353 1mq7A 154 9.830 b.85.4.1 79404 1h9dA 134 10.30 b.2.5.6 60821 1g8kB 133 10.39 b.33.1.1 24435 2ag9A 164 11.00 2ag4A 164 13.03 b.95.1.1 126717 2p52A 196 15.72 1qf9A 194 17.81 c.37.1.1 31848 2pcxA 220 18.62 2ac0A 200 18.69 b.2.5.2 126539 2bsyA 278 19.16 b.85.4.1,b.85.4.1 129129,129130 1f7sA 139 19.25 d.109.1.2 40857 2vphA 100 19.80 2iyaA 424 21.47 2ozfA 92 24.11 2q3gA 89 26.31 1jv4A 162 26.87 b.60.1.1 67343 1abrB 267 27.00 b.42.2.1,b.42.2.1 25563,25564 2cvkA 110 28.42 3b3fA 341 28.55 1uasA 362 28.74 b.71.1.1,c.1.8.1 88388,88389 1gpr 162 28.88 2v74B 346 29.58 2yzuA 109 29.83 2v90A 96 32.48 1s31A 273 33.05 2eng 210 33.55 1m40A 263 33.86 e.3.1.1 74437 2psoA 237 34.21 1fvrA 327 35.51 d.144.1.7 60047 2pktA 91 36.55 1znwA 207 36.70 c.37.1.1 125412 2cmgA 262 38.30 2iuyA 342 38.40 1l8fA 207 38.47 b.52.1.1 84537 2nv1A 305 38.79 2i5oA 39 39.21 1gbg 214 40.32 2fwvA 226 40.44 2e0qA 104 40.70 2j21A 219 41.35 1jwiB 125 42.28 d.169.1.1 67384 1v5lA 103 43.62 b.36.1.1 108378 1fezA 256 44.11 c.108.1.3 43343 1sqhA 312 45.13 d.108.1.5 98966 1sixA 174 45.94 b.85.4.1 98892 2zdrA 349 45.96 2yzrA 330 47.31 3cebA 194 48.21 1vmeA 410 48.62 c.23.5.1,d.157.1.3 108893,108894 2de6D 115 49.03 2i6gA 199 50.15 c.66.1.44 137096 2ocsA 88 52.17 2zbvA 263 52.40 3pte 349 52.95 1jqeA 292 54.16 c.66.1.19 71789 3cqbA 107 54.59 2pa1A 87 55.13 1hq8A 123 55.62 d.169.1.1 61127 1ybiA 288 56.40 2qntA 141 56.41 1thxA 115 57.59 c.47.1.1 32732 2fb2A 340 57.97 1u5xA 140 57.97 b.22.1.1 113055 1uliA 460 58.16 b.33.1.2,d.129.3.3 107921,107922 1n7eA 97 58.79 b.36.1.1 91691 1qexA 288 59.08 b.32.1.1 24425 2prvA 153 59.82 1nwbA 124 59.88 b.124.1.1 86296 1knmA 130 60.75 b.42.2.1 72781 1be9A 119 61.88 b.36.1.1 24774 1eaqA 140 62.34 b.2.5.6 76144 1dunA 134 62.51 b.85.4.1 28371 2ioiA 201 62.76 2egoA 96 62.84 1fvuB 125 62.99 d.169.1.1 42346 2j43A 219 63.46 1tz9A 367 63.71 c.1.15.6 107466 1v7pB 128 63.83 d.169.1.1 108407 1gln 468 66.13 1xuuA 349 66.18 b.85.1.1,c.1.10.6 116067,116068 2engA 210 67.76 b.52.1.1 26895 2fazA 78 68.23 d.15.1.1 133223 1cl8A 276 68.85 c.52.1.1 33230 1f6yA 262 69.27 c.1.21.2 29673 1gprA 162 69.53 b.84.3.1 28267 2a9gA 418 69.90 d.126.1.4 126435 2i7fA 108 70.31 2a6aA 218 71.04 c.55.1.9,c.55.1.9 126231,126232 1wmzA 140 71.26 d.169.1.1 109422 1swvA 267 71.80 c.108.1.3 112134 3cbwA 353 75.11 2jz8A 87 75.42 2agcA 162 75.72 2qg1A 92 77.63 1r94A 118 79.22 b.124.1.1 97251 1uwcA 261 79.45 c.69.1.17 100101 1a2vA 655 80.24 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 1yub 245 82.66 2gh1A 301 82.88 c.66.1.49 135170 1pwgA 349 83.78 e.3.1.1 104340 4tsvA 150 85.66 b.22.1.1 23860 1e6cA 173 89.29 c.37.1.2 59296 1y97A 238 89.41 c.55.3.5 122773 1rutX 188 89.57 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1f3zA 161 89.66 b.84.3.1 28273