# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r3aA 300 3.16e-32 2qpwA 149 7.38e-32 2f69A 261 1.71e-31 b.76.2.1,b.85.7.1 133035,133036 2rfiA 285 8.77e-31 3bo5A 290 9.89e-31 1zkkA 167 1.48e-30 1n6aA 259 1.68e-30 b.76.2.1,b.85.7.1 80121,80122 2igqA 285 2.14e-30 2o8jA 281 2.78e-30 1ml9A 302 2.90e-30 b.85.7.1 79282 1n3jA 119 7.03e-23 b.85.7.2 79963 2h21A 440 6.49e-15 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 2.54e-14 a.166.1.1,b.85.7.3 87654,87655 1lm5A 214 1.394 d.211.2.1 74029 1lm7A 248 1.530 d.211.2.1 74031 1v6fA 151 5.073 d.109.1.2 108395 1h9dA 134 6.344 b.2.5.6 60821 2oemA 413 7.940 1mq7A 154 8.894 b.85.4.1 79404 1f7dA 136 9.148 b.85.4.1 28353 1gky 187 9.551 2ag9A 164 9.758 2zbtA 297 12.64 1s31A 273 13.00 2ag4A 164 13.14 b.95.1.1 126717 1uasA 362 13.96 b.71.1.1,c.1.8.1 88388,88389 2p52A 196 14.35 2pcxA 220 14.68 1f7sA 139 15.81 d.109.1.2 40857 2ac0A 200 16.90 b.2.5.2 126539 2bsyA 278 17.74 b.85.4.1,b.85.4.1 129129,129130 1qf9A 194 18.53 c.37.1.1 31848 2vphA 100 18.57 2iyaA 424 20.22 1g8kB 133 20.92 b.33.1.1 24435 2ozfA 92 20.96 2q3gA 89 22.83 1jv4A 162 22.93 b.60.1.1 67343 3pte 349 23.34 2v90A 96 23.37 1qwnA 1045 25.72 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1abrB 267 25.84 b.42.2.1,b.42.2.1 25563,25564 2cmgA 262 26.23 2pktA 91 26.29 1m40A 263 28.53 e.3.1.1 74437 1gpr 162 28.60 2zdrA 349 29.86 2j21A 219 30.48 2cvkA 110 31.12 1qexA 288 31.28 b.32.1.1 24425 2yzuA 109 32.03 1pwgA 349 32.91 e.3.1.1 104340 2ocsA 88 33.57 1sixA 174 34.13 b.85.4.1 98892 3b3fA 341 35.23 1eaqA 140 37.45 b.2.5.6 76144 2v74B 346 38.01 1xuuA 349 38.42 b.85.1.1,c.1.10.6 116067,116068 2iuyA 342 38.72 1v5lA 103 39.96 b.36.1.1 108378 1gbg 214 40.31 1fvrA 327 41.07 d.144.1.7 60047 2i5oA 39 41.99 2fwvA 226 43.56 2egoA 96 43.85 2fb2A 340 43.90 2pa1A 87 43.93 1znwA 207 44.67 c.37.1.1 125412 1uliA 460 44.90 b.33.1.2,d.129.3.3 107921,107922 2psoA 237 45.20 2zbvA 263 45.32 1jwiB 125 45.46 d.169.1.1 67384 2eng 210 45.64 1vlyA 338 46.08 b.44.2.1,d.250.1.1 108871,108872 1vr3A 191 46.20 b.82.1.6 120431 1tzfA 259 46.23 c.68.1.13 107476 2prvA 153 46.47 2e0qA 104 46.54 2ioiA 201 49.01 1v7pB 128 50.21 d.169.1.1 108407 3cebA 194 50.47 1knmA 130 50.85 b.42.2.1 72781 1cl8A 276 52.77 c.52.1.1 33230 1thxA 115 53.73 c.47.1.1 32732 1hq8A 123 53.74 d.169.1.1 61127 1sqhA 312 53.87 d.108.1.5 98966 1l8fA 207 54.90 b.52.1.1 84537 1dunA 134 57.25 b.85.4.1 28371 2agcA 162 57.30 1mmqA 170 58.21 d.92.1.11 40396 1a2vA 655 58.52 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 2nv1A 305 59.05 1n7eA 97 59.31 b.36.1.1 91691 1nwbA 124 60.30 b.124.1.1 86296 2yzrA 330 60.35 2gh1A 301 60.62 c.66.1.49 135170 1txkA 498 61.84 b.1.18.2,b.30.5.9 107425,107426 1ybiA 288 63.81 2qntA 141 64.49 1be9A 119 64.98 b.36.1.1 24774 1gprA 162 65.45 b.84.3.1 28267 2a6aA 218 66.47 c.55.1.9,c.55.1.9 126231,126232 2hi0A 240 66.79 1qxrA 189 68.55 b.82.1.7 96552 1tz9A 367 68.71 c.1.15.6 107466 1wl7A 312 69.62 b.67.2.1 120996 2j43A 219 70.72 1jj2B 337 73.14 b.43.3.2 63086 2a9gA 418 73.32 d.126.1.4 126435 3cbwA 353 74.16 1f6yA 262 74.43 c.1.21.2 29673 2fazA 78 74.98 d.15.1.1 133223 1r94A 118 75.61 b.124.1.1 97251 1fezA 256 77.64 c.108.1.3 43343 1fvuB 125 77.86 d.169.1.1 42346 1wmzA 140 80.75 d.169.1.1 109422 2qg1A 92 81.07 2i6gA 199 81.51 c.66.1.44 137096 1uwcA 261 82.66 c.69.1.17 100101 1vmeA 410 83.43 c.23.5.1,d.157.1.3 108893,108894 2engA 210 83.58 b.52.1.1 26895 2f5yA 91 85.01 b.36.1.1 133015 1m4jA 142 86.85 d.109.1.2 78602 2de6D 115 87.36 3cqbA 107 88.03 1eo9A 209 88.44 b.3.6.1 22731 2b0vA 153 89.84 d.113.1.1 127650