# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r3aA 300 1.12e-28 2qpwA 149 3.76e-28 3bo5A 290 1.15e-27 2rfiA 285 1.48e-27 1zkkA 167 2.02e-27 2f69A 261 2.26e-27 b.76.2.1,b.85.7.1 133035,133036 2o8jA 281 2.40e-27 2igqA 285 3.28e-27 1ml9A 302 3.92e-27 b.85.7.1 79282 1n6aA 259 1.87e-26 b.76.2.1,b.85.7.1 80121,80122 1n3jA 119 4.99e-20 b.85.7.2 79963 1p0yA 444 8.97e-14 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 1.38e-13 a.166.1.1,b.85.7.3 135976,135977 1lm5A 214 1.076 d.211.2.1 74029 1lm7A 248 2.345 d.211.2.1 74031 2gh1A 301 2.705 c.66.1.49 135170 2v90A 96 3.131 2ozfA 92 3.298 2egoA 96 4.353 2q3gA 89 4.356 2jilA 97 6.423 1qf9A 194 7.752 c.37.1.1 31848 2vphA 100 8.924 2pktA 91 10.01 2i1nA 102 10.13 1be9A 119 12.19 b.36.1.1 24774 1n7eA 97 12.48 b.36.1.1 91691 2fe5A 94 13.13 b.36.1.1 133323 1gky 187 13.53 1v6fA 151 13.79 d.109.1.2 108395 1qavA 90 13.99 b.36.1.1 24777 2rgxA 206 14.41 1abrB 267 15.16 b.42.2.1,b.42.2.1 25563,25564 2qg1A 92 15.64 1s31A 273 15.75 2awxA 105 15.76 2yzrA 330 16.60 2jikA 101 16.97 2he2A 102 17.05 2i5oA 39 17.86 2f0aA 98 17.88 b.36.1.1 132661 1qauA 112 18.27 b.36.1.1 24779 1mmqA 170 18.65 d.92.1.11 40396 2z10A 194 19.03 1v5lA 103 19.62 b.36.1.1 108378 2fcfA 103 20.20 b.36.1.1 133267 2pa1A 87 20.20 1wf7A 103 20.42 b.36.1.1 114577 1vlyA 338 21.04 b.44.2.1,d.250.1.1 108871,108872 2rczA 81 21.36 1vh0A 161 21.44 c.116.1.3 100626 1g9oA 91 22.09 b.36.1.1 60400 2ocsA 88 22.09 2ag4A 164 22.65 b.95.1.1 126717 1f7sA 139 22.79 d.109.1.2 40857 1yk3A 210 23.53 d.108.1.1 123493 1fezA 256 23.59 c.108.1.3 43343 2he4A 90 24.19 1q3oA 109 26.32 b.36.1.1 95700 2h2bA 107 27.09 1mfgA 95 27.75 b.36.1.1 79043 1f7dA 136 28.68 b.85.4.1 28353 1ihjA 98 28.95 b.36.1.1 62382 1u8bA 133 29.25 1m40A 263 30.39 e.3.1.1 74437 2v7pA 310 30.82 2opgA 98 31.21 2iwoA 120 31.93 2qkvA 96 32.96 2f5yA 91 33.07 b.36.1.1 133015 2iwnA 97 33.61 1tz9A 367 38.27 c.1.15.6 107466 1akyA 220 40.91 c.37.1.1,g.41.2.1 31896,45197 1tp5A 119 41.09 b.36.1.1 119305 2ggtA 164 41.44 c.47.1.10 135156 2fneA 117 41.80 b.36.1.1 133813 1qcsA 211 42.14 b.52.2.3,d.31.1.1 26927,38461 2oo4A 234 42.21 2p52A 196 43.67 2bl0C 142 44.17 1kwaA 88 45.20 b.36.1.1 24772 2ax4A 198 45.61 2vlaA 285 47.14 1jqeA 292 47.32 c.66.1.19 71789 2h3lA 103 47.91 b.36.1.1 136046 2ac0A 200 49.07 b.2.5.2 126539 1mq7A 154 49.95 b.85.4.1 79404 2i6gA 199 50.68 c.66.1.44 137096 1h9dA 134 50.86 b.2.5.6 60821 1v88A 130 51.09 b.55.1.1 108423 1swvA 267 51.78 c.108.1.3 112134 3broA 141 54.93 4bclA 366 55.47 b.75.1.1 27968 2fckA 181 56.23 d.108.1.1 133272 2agcA 162 56.80 2i2qA 137 57.80 1y97A 238 58.62 c.55.3.5 122773 1nf3C 128 59.32 b.36.1.1 85596 2f3yA 148 59.38 1zx6A 58 59.64 2oemA 413 61.08 1y0vH 146 61.46 2i04A 85 62.16 2gzvA 114 62.38 1jv4A 162 63.67 b.60.1.1 67343 1xuuA 349 64.82 b.85.1.1,c.1.10.6 116067,116068 1xfxO 149 66.98 a.39.1.5 121955 1tuc 63 67.02 3pte 349 67.25 1l6oA 95 67.58 b.36.1.1 84534 2de6D 115 69.76 1sixA 174 70.69 b.85.4.1 98892 2pcxA 220 71.02 1v4vA 376 71.69 c.87.1.3 100313 2p8uA 478 71.90 1prxA 224 72.22 c.47.1.10 33076 1pvaA 110 73.42 a.39.1.4 17207 1l1zA 274 73.72 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 2ol1A 147 73.83 2ag9A 164 74.04 1tltA 319 74.20 c.2.1.3,d.81.1.5 107135,107136 2eu8A 216 74.77 1gcqA 61 75.10 b.34.2.1 60434 1n7hA 381 75.40 c.2.1.2 80250 2aucA 126 75.54 1rqlA 267 75.76 c.108.1.3 97750 1alvA 173 75.98 a.39.1.8 17370 1rutX 188 76.46 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1ggzA 148 77.05 a.39.1.5 70176 3be4A 217 78.68 2oa4A 101 78.93 1hg7A 66 79.17 b.85.1.1 28280 1f4qA 165 79.57 a.39.1.8 17360 1sl8A 191 80.86 a.39.1.5 112099 1zowA 313 81.66 3cqbA 107 81.85 2aegA 268 82.21 d.303.1.1 126622 1v6tA 255 82.46 c.6.2.5 113550 1semA 58 82.70 b.34.2.1 24544 1w70A 60 83.58 1ztxE 108 83.72 b.1.18.4 125658 1gpr 162 84.75 1nrkA 328 85.42 b.44.2.1,d.250.1.1 92089,92090 1owxA 121 86.01 d.58.7.1 87494 1ukz 203 87.59 1txkA 498 87.70 b.1.18.2,b.30.5.9 107425,107426 2g64A 140 87.97 d.96.1.2 134694 1exrA 148 89.10 a.39.1.5 17299 2zbtA 297 89.22 1sqhA 312 89.69 d.108.1.5 98966