# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 1.90e-34 2r3aA 300 1.93e-34 3bo5A 290 4.80e-33 2f69A 261 7.32e-33 b.76.2.1,b.85.7.1 133035,133036 2rfiA 285 1.48e-32 1zkkA 167 3.51e-32 1n6aA 259 4.02e-32 b.76.2.1,b.85.7.1 80121,80122 2o8jA 281 4.05e-32 2igqA 285 4.39e-32 1ml9A 302 4.86e-32 b.85.7.1 79282 1n3jA 119 2.77e-24 b.85.7.2 79963 2h21A 440 8.56e-16 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 2.13e-15 a.166.1.1,b.85.7.3 87654,87655 1lm5A 214 0.3283 d.211.2.1 74029 1lm7A 248 0.5242 d.211.2.1 74031 1gky 187 4.477 2ag9A 164 5.925 1abrB 267 7.333 b.42.2.1,b.42.2.1 25563,25564 2ag4A 164 7.707 b.95.1.1 126717 1qf9A 194 8.499 c.37.1.1 31848 2oemA 413 8.988 2pcxA 220 10.06 2p52A 196 10.33 1fvrA 327 12.47 d.144.1.7 60047 1jv4A 162 13.49 b.60.1.1 67343 1v6fA 151 14.01 d.109.1.2 108395 2zbtA 297 14.09 1znwA 207 14.40 c.37.1.1 125412 2ac0A 200 15.88 b.2.5.2 126539 2cvkA 110 19.58 1mq7A 154 19.93 b.85.4.1 79404 1gpr 162 20.93 2yzuA 109 21.46 1uliA 460 21.69 b.33.1.2,d.129.3.3 107921,107922 1sqhA 312 23.04 d.108.1.5 98966 1h9dA 134 24.26 b.2.5.6 60821 2bsyA 278 24.79 b.85.4.1,b.85.4.1 129129,129130 1gln 468 25.02 1fl2A 310 26.58 c.3.1.5,c.3.1.5 59869,59870 2psoA 237 27.25 2j21A 219 28.13 1v5lA 103 28.89 b.36.1.1 108378 3pte 349 28.97 2de6D 115 29.36 1f7dA 136 29.55 b.85.4.1 28353 2vphA 100 30.56 2iyaA 424 30.95 1f7sA 139 30.99 d.109.1.2 40857 1s31A 273 32.79 1a2vA 655 34.08 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 1g8kB 133 34.36 b.33.1.1 24435 2prvA 153 35.06 2cmgA 262 35.09 2i5oA 39 36.42 2ozfA 92 38.46 1nwbA 124 38.67 b.124.1.1 86296 2e0qA 104 38.92 1tu1A 148 38.96 d.107.1.3 107316 2fb2A 340 39.10 1wl7A 312 39.12 b.67.2.1 120996 1eo9A 209 39.68 b.3.6.1 22731 1qcsA 211 41.66 b.52.2.3,d.31.1.1 26927,38461 1l8fA 207 42.14 b.52.1.1 84537 2zdrA 349 42.19 2v90A 96 42.20 2de6A 392 43.71 b.33.1.2,d.129.3.3 131415,131416 1fezA 256 44.98 c.108.1.3 43343 1n7eA 97 45.13 b.36.1.1 91691 1gbg 214 45.39 1sixA 174 45.49 b.85.4.1 98892 2eng 210 45.54 1u1zA 168 46.08 d.38.1.6 107602 1m40A 263 47.05 e.3.1.1 74437 2rgxA 206 48.75 1gprA 162 48.98 b.84.3.1 28267 1ybiA 288 49.46 1hq8A 123 49.59 d.169.1.1 61127 1jqeA 292 51.05 c.66.1.19 71789 2i7fA 108 52.12 2burA 209 52.13 b.3.6.1 129227 2ioiA 201 53.26 2q3gA 89 53.26 1v7pB 128 53.43 d.169.1.1 108407 1thxA 115 54.26 c.47.1.1 32732 1xl7A 612 55.26 c.43.1.3,c.43.1.3 115438,115439 2jz8A 87 55.37 3cebA 194 55.39 1uasA 362 56.46 b.71.1.1,c.1.8.1 88388,88389 1d8wA 426 56.59 c.1.15.2 29394 2debA 653 58.43 1k6wA 426 59.54 b.92.1.2,c.1.9.5 68236,68237 2fwvA 226 61.65 2yzrA 330 62.13 1f3zA 161 64.09 b.84.3.1 28273 1pwgA 349 64.42 e.3.1.1 104340 1vlyA 338 64.55 b.44.2.1,d.250.1.1 108871,108872 2j8gA 339 64.86 1y4wA 518 65.79 b.29.1.19,b.67.2.3 116470,116471 1onqA 283 66.01 b.1.1.2,d.19.1.1 93365,93366 1a8lA 226 66.25 c.47.1.2,c.47.1.2 32777,32778 1cl8A 276 66.39 c.52.1.1 33230 4bclA 366 67.90 b.75.1.1 27968 1qexA 288 68.11 b.32.1.1 24425 3cqbA 107 68.16 2a6sA 84 69.02 d.298.1.1 126305 1l1zA 274 70.39 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1r94A 118 70.60 b.124.1.1 97251 1oqyA 368 71.37 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1yk3A 210 71.78 d.108.1.1 123493 2egoA 96 72.53 2iuyA 342 72.57 1jwiB 125 73.57 d.169.1.1 67384 2pn0A 141 74.37 1t1uA 639 74.96 c.43.1.3,c.43.1.3 119110,119111 1mmqA 170 76.13 d.92.1.11 40396 2ohcA 289 76.42 1qstA 160 77.08 d.108.1.1 40804 1e6cA 173 78.44 c.37.1.2 59296 2aaiB 262 78.49 b.42.2.1,b.42.2.1 25561,25562 1twfK 120 78.49 d.74.3.2 112736 2zbvA 263 79.31 1cpnA 208 79.41 b.29.1.2 24175 3cbwA 353 80.55 2b0vA 153 80.69 d.113.1.1 127650 2hq7A 146 81.81 b.45.1.1 136657 1knmA 130 81.86 b.42.2.1 72781 2i5nH 258 82.28 b.41.1.1,f.23.10.1 137064,137065 1z4rA 168 83.16 d.108.1.1 124444 2i6gA 199 85.96 c.66.1.44 137096 2a9gA 418 86.00 d.126.1.4 126435 2ffuA 501 87.38 2gh1A 301 87.41 c.66.1.49 135170 2h4tA 626 87.85 1k0rA 366 87.91 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 2htaA 309 88.43 2a6aA 218 89.41 c.55.1.9,c.55.1.9 126231,126232 1n7hA 381 89.83 c.2.1.2 80250