# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 7.97e-27 2r3aA 300 1.13e-26 3bo5A 290 7.78e-26 2f69A 261 8.20e-26 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 1.77e-25 b.76.2.1,b.85.7.1 80121,80122 1ml9A 302 1.84e-25 b.85.7.1 79282 1zkkA 167 3.71e-25 2igqA 285 3.06e-24 2rfiA 285 1.56e-23 2o8jA 281 3.78e-23 1n3jA 119 1.62e-18 b.85.7.2 79963 2h21A 440 1.63e-12 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 4.89e-11 a.166.1.1,b.85.7.3 87654,87655 1dfaA 454 0.2080 b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 2zbtA 297 6.173 1lm5A 214 7.066 d.211.2.1 74029 1kit 757 8.228 1k0fA 277 10.01 c.92.2.2 71974 1czaN 917 10.46 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33463,33464,33465,33466 2as0A 396 10.57 b.122.1.9,c.66.1.51 127227,127228 1i19A 561 11.21 d.58.32.3,d.145.1.1 61522,61523 2o6yA 521 11.66 2fb2A 340 13.02 1n67A 359 13.40 b.2.3.4,b.2.3.4 85354,85355 1vnsA 609 14.24 a.111.1.3 19061 1qf6A 642 14.33 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 1uteA 313 16.12 d.159.1.1 42078 1o7eA 276 16.21 e.3.1.1 92622 2q7nA 488 17.71 2a9gA 418 20.16 d.126.1.4 126435 1qexA 288 20.36 b.32.1.1 24425 1w0pA 781 20.36 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 1vns 609 22.88 2ffuA 501 26.20 2bmwA 304 26.44 b.43.4.2,c.25.1.1 128815,128816 1t3tA 1303 27.08 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1lm7A 248 27.15 d.211.2.1 74031 2oh5A 248 27.53 1oaoC 729 27.55 e.26.1.3 86746 1v6fA 151 28.37 d.109.1.2 108395 1h9dA 134 28.82 b.2.5.6 60821 1sr7A 259 29.41 a.123.1.1 105957 2qmjA 870 30.28 1te5A 257 30.59 d.153.1.1 106795 1wu2A 396 34.54 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 2qntA 141 34.81 1f7sA 139 35.24 d.109.1.2 40857 2hi4A 495 37.11 3stdA 165 37.12 d.17.4.1 38073 1ybiA 288 37.19 2df7A 458 37.45 b.121.4.9 131449 1mq7A 154 37.87 b.85.4.1 79404 2j8gA 339 40.79 2qrlA 394 41.46 1j08A 226 44.93 c.47.1.2,c.47.1.2 83855,83856 2imhA 231 45.95 2aamA 309 45.98 c.1.8.15 126489 2yweA 600 46.03 1xl7A 612 46.62 c.43.1.3,c.43.1.3 115438,115439 1poiA 317 47.54 c.124.1.2 34153 1p4tA 155 47.66 f.4.1.1 87779 1f7dA 136 48.80 b.85.4.1 28353 1qf9A 194 51.15 c.37.1.1 31848 1p2hA 571 52.29 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2j0wA 449 53.59 c.73.1.3,d.58.18.10,d.58.18.10 137923,137924,137925 2exrA 524 53.74 1o4yA 288 54.20 b.29.1.2 92473 1pguA 615 56.20 b.69.4.1,b.69.4.1 88069,88070 1cl8A 276 56.28 c.52.1.1 33230 1hjxA 362 57.96 c.1.8.5,d.26.3.1 83512,83513 1mmqA 170 59.22 d.92.1.11 40396 1m40A 263 59.33 e.3.1.1 74437 2ac0A 200 60.64 b.2.5.2 126539 1vlyA 338 61.00 b.44.2.1,d.250.1.1 108871,108872 3c6gA 479 61.03 1std 172 61.76 1fvrA 327 62.39 d.144.1.7 60047 2bazA 142 63.96 1bhe 376 64.50 2a77H 222 64.52 b.1.1.2 126328 1sz6B 263 64.99 b.42.2.1,b.42.2.1 112172,112173 1gydB 315 66.70 b.67.2.1 70751 2a1hA 365 67.19 e.17.1.1 125997 2aq5A 402 67.43 1jv4A 162 67.54 b.60.1.1 67343 2psoA 237 67.98 2prvA 153 68.57 2aaiB 262 68.86 b.42.2.1,b.42.2.1 25561,25562 2f7lA 455 69.01 1wwlA 312 70.27 2evvA 207 70.43 1euaA 213 71.91 c.1.10.1 29155 2c42A 1231 72.06 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 129790,129791,129792,129793,129794 2pmbA 462 73.48 2p9oA 169 73.92 1nwbA 124 74.35 b.124.1.1 86296 1cjcA 460 74.77 c.3.1.1,c.4.1.1 30319,30604 2zdrA 349 74.93 1wyuB 474 74.98 c.67.1.7 121453 2qe8A 343 75.70 2z1pA 348 76.10 1g8kB 133 77.00 b.33.1.1 24435 2mprA 421 77.10 f.4.3.2 43788 2jixB 225 77.61 2p52A 196 78.17 1c8zA 265 78.54 d.23.1.1 38375 1s31A 273 78.67 2j7qA 232 79.07 2f8lA 344 79.47 c.66.1.45 133132 1xj4A 119 79.86 d.110.3.2 122027 1lokA 291 80.34 c.56.5.4 78122 1on3A 523 82.14 c.14.1.4,c.14.1.4 87107,87108 1d7pM 159 82.77 b.18.1.2 23718 1gj7B 253 86.60 2bcjB 340 87.02 b.69.4.1 128289 1xf1A 926 87.97 1uasA 362 87.99 b.71.1.1,c.1.8.1 88388,88389 2ozfA 92 88.88