# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2r3aA	300	1.40e-32		
2qpwA	149	1.94e-32		
2f69A	261	3.35e-31	b.76.2.1,b.85.7.1	133035,133036
3bo5A	290	3.45e-31		
2rfiA	285	8.41e-31		
1n6aA	259	1.58e-30	b.76.2.1,b.85.7.1	80121,80122
2igqA	285	1.64e-30		
1ml9A	302	2.13e-30	b.85.7.1	79282
1zkkA	167	2.28e-30		
2o8jA	281	2.31e-30		
1n3jA	119	7.83e-23	b.85.7.2	79963
2h21A	440	7.18e-15	a.166.1.1,b.85.7.3	135976,135977
1p0yA	444	3.43e-14	a.166.1.1,b.85.7.3	87654,87655
1lm5A	214	1.097	d.211.2.1	74029
1lm7A	248	1.739	d.211.2.1	74031
1gky	187	3.945		
1v6fA	151	8.477	d.109.1.2	108395
2oemA	413	9.169		
1qf9A	194	9.253	c.37.1.1	31848
2ag9A	164	10.15		
2pcxA	220	12.33		
2p52A	196	13.91		
1fvrA	327	14.13	d.144.1.7	60047
1mq7A	154	14.26	b.85.4.1	79404
2zbtA	297	14.45		
1mmqA	170	14.50	d.92.1.11	40396
2ag4A	164	15.60	b.95.1.1	126717
1abrB	267	16.13	b.42.2.1,b.42.2.1	25563,25564
1s31A	273	16.99		
2ac0A	200	17.72	b.2.5.2	126539
1h9dA	134	17.81	b.2.5.6	60821
1f7sA	139	18.75	d.109.1.2	40857
2bsyA	278	20.12	b.85.4.1,b.85.4.1	129129,129130
1f7dA	136	20.37	b.85.4.1	28353
1gpr	162	21.05		
2vphA	100	23.87		
1znwA	207	23.94	c.37.1.1	125412
1v5lA	103	27.76	b.36.1.1	108378
1sqhA	312	28.49	d.108.1.5	98966
1g8kB	133	29.31	b.33.1.1	24435
2j21A	219	30.29		
2zdrA	349	30.35		
1a2vA	655	30.86	b.30.2.1,d.17.2.1,d.17.2.1	24416,38059,38060
1jv4A	162	31.66	b.60.1.1	67343
2psoA	237	31.85		
2ozfA	92	34.58		
1sixA	174	35.06	b.85.4.1	98892
2fb2A	340	35.34		
2cvkA	110	36.18		
2fwvA	226	36.61		
2iyaA	424	38.25		
2q3gA	89	39.05		
1gbg	214	39.91		
2yzuA	109	41.43		
2v90A	96	41.52		
2zbvA	263	41.82		
3cqbA	107	42.80		
1v7pB	128	45.45	d.169.1.1	108407
1cl8A	276	46.74	c.52.1.1	33230
1gprA	162	47.05	b.84.3.1	28267
2a6aA	218	47.31	c.55.1.9,c.55.1.9	126231,126232
1m40A	263	48.28	e.3.1.1	74437
1n7eA	97	52.31	b.36.1.1	91691
1fvuB	125	53.13	d.169.1.1	42346
2ioiA	201	54.65		
1thxA	115	55.15	c.47.1.1	32732
2i5oA	39	55.34		
2cmgA	262	56.96		
2iuyA	342	56.98		
2rgxA	206	58.90		
1gln	468	59.19		
1vlyA	338	60.11	b.44.2.1,d.250.1.1	108871,108872
3pte	349	60.15		
2egoA	96	60.34		
1be9A	119	60.57	b.36.1.1	24774
1vmeA	410	62.25	c.23.5.1,d.157.1.3	108893,108894
1eo9A	209	62.29	b.3.6.1	22731
2e0qA	104	62.43		
3cebA	194	63.71		
1nrgA	261	64.92	b.45.1.1	80694
2pktA	91	65.91		
1fl2A	310	66.22	c.3.1.5,c.3.1.5	59869,59870
2jz8A	87	66.35		
1jwiB	125	66.72	d.169.1.1	67384
1fezA	256	66.86	c.108.1.3	43343
1nwbA	124	67.01	b.124.1.1	86296
1ybiA	288	67.47		
1qstA	160	68.83	d.108.1.1	40804
1l1zA	274	70.57	a.156.1.2,b.113.1.1,g.39.1.8	75911,75912,75913
1uliA	460	71.63	b.33.1.2,d.129.3.3	107921,107922
1pwgA	349	72.22	e.3.1.1	104340
2ocsA	88	73.02		
2prvA	153	73.31		
2qg1A	92	73.64		
2b0vA	153	74.04	d.113.1.1	127650
3cbwA	353	75.05		
2burA	209	75.36	b.3.6.1	129227
1cpnA	208	77.15	b.29.1.2	24175
2hq7A	146	78.66	b.45.1.1	136657
1twfK	120	78.74	d.74.3.2	112736
1hq8A	123	79.74	d.169.1.1	61127
2pn0A	141	84.54		
1k0rA	366	86.22	b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1	67961,67962,67963,67964
1rutX	188	88.00	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1te5A	257	88.00	d.153.1.1	106795
1t46A	313	88.45	d.144.1.7	106397
1u1zA	168	88.47	d.38.1.6	107602
1oqyA	368	88.63	a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1	93439,93440,93441,93442
1l8fA	207	88.63	b.52.1.1	84537
2i7fA	108	89.90