# List of top-scoring protein chains for t04-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r3aA 300 3.25e-32 2qpwA 149 1.04e-31 2f69A 261 3.81e-31 b.76.2.1,b.85.7.1 133035,133036 3bo5A 290 8.18e-31 1n6aA 259 1.07e-30 b.76.2.1,b.85.7.1 80121,80122 2rfiA 285 1.76e-30 1zkkA 167 2.23e-30 1ml9A 302 3.10e-30 b.85.7.1 79282 2igqA 285 4.50e-30 2o8jA 281 5.31e-30 1n3jA 119 9.71e-23 b.85.7.2 79963 2h21A 440 3.45e-15 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 4.26e-14 a.166.1.1,b.85.7.3 87654,87655 1lm7A 248 1.335 d.211.2.1 74031 1lm5A 214 2.597 d.211.2.1 74029 1v6fA 151 3.632 d.109.1.2 108395 1h9dA 134 7.105 b.2.5.6 60821 1gky 187 8.308 2p52A 196 9.843 2zbtA 297 9.871 2oemA 413 10.24 1qf9A 194 10.83 c.37.1.1 31848 1mq7A 154 10.93 b.85.4.1 79404 2ag9A 164 16.32 2pcxA 220 17.58 1uasA 362 17.94 b.71.1.1,c.1.8.1 88388,88389 1f7dA 136 18.18 b.85.4.1 28353 2ag4A 164 18.36 b.95.1.1 126717 2ac0A 200 21.77 b.2.5.2 126539 1znwA 207 22.62 c.37.1.1 125412 1f7sA 139 22.88 d.109.1.2 40857 1jv4A 162 24.09 b.60.1.1 67343 2psoA 237 25.42 2dkoA 146 26.08 1s31A 273 26.33 1mmqA 170 28.21 d.92.1.11 40396 2v74B 346 29.73 2fb2A 340 29.82 1fvuB 125 32.55 d.169.1.1 42346 1fvrA 327 33.24 d.144.1.7 60047 1jwiB 125 33.44 d.169.1.1 67384 1v7pB 128 34.19 d.169.1.1 108407 1abrB 267 34.40 b.42.2.1,b.42.2.1 25563,25564 1sixA 174 34.83 b.85.4.1 98892 2iyaA 424 35.13 1gpr 162 36.27 1g8kB 133 36.78 b.33.1.1 24435 1jqeA 292 37.07 c.66.1.19 71789 1cl8A 276 40.24 c.52.1.1 33230 1v5lA 103 40.71 b.36.1.1 108378 2bsyA 278 42.77 b.85.4.1,b.85.4.1 129129,129130 1vmeA 410 44.43 c.23.5.1,d.157.1.3 108893,108894 3b3fA 341 44.99 1eaqA 140 47.77 b.2.5.6 76144 2gh1A 301 47.89 c.66.1.49 135170 2v90A 96 48.23 2j21A 219 49.59 2fwvA 226 51.61 2nv1A 305 51.61 2zbvA 263 52.46 2ozfA 92 52.75 1fl2A 310 53.36 c.3.1.5,c.3.1.5 59869,59870 1pyoA 167 54.02 c.17.1.1 95370 2prvA 153 55.13 1nwbA 124 56.55 b.124.1.1 86296 2i5oA 39 57.85 2cvkA 110 57.92 2q3gA 89 57.97 2iuyA 342 58.70 2e0qA 104 60.46 2vphA 100 61.51 1qexA 288 61.91 b.32.1.1 24425 2zdrA 349 62.21 1jj2B 337 62.51 b.43.3.2 63086 1m4jA 142 63.49 d.109.1.2 78602 3cebA 194 64.34 2yzuA 109 64.72 1l8fA 207 66.05 b.52.1.1 84537 2eng 210 69.21 1m40A 263 70.45 e.3.1.1 74437 2cmgA 262 71.47 2pktA 91 71.56 2ioiA 201 71.81 1f6yA 262 72.20 c.1.21.2 29673 1xuuA 349 72.50 b.85.1.1,c.1.10.6 116067,116068 1thxA 115 73.61 c.47.1.1 32732 1tuc 63 74.29 1qtnA 164 75.41 c.17.1.1 30999 1k0rA 366 76.75 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 2ohcA 289 76.86 1uwcA 261 77.45 c.69.1.17 100101 2i6gA 199 77.80 c.66.1.44 137096 2rgxA 206 77.87 1a0fA 201 78.23 a.45.1.1,c.47.1.5 17737,33031 1j34B 123 78.41 d.169.1.1 84049 1gln 468 79.77 2drhA 361 79.93 1r94A 118 80.12 b.124.1.1 97251 1sqhA 312 80.66 d.108.1.5 98966 1hq8A 123 81.41 d.169.1.1 61127 1gprA 162 87.38 b.84.3.1 28267 1ybiA 288 87.61 1cpnA 208 87.65 b.29.1.2 24175 1te5A 257 88.40 d.153.1.1 106795