# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r3aA 300 2.89e-32 2qpwA 149 1.06e-31 2f69A 261 3.05e-31 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 4.62e-31 b.76.2.1,b.85.7.1 80121,80122 3bo5A 290 6.14e-31 1zkkA 167 1.74e-30 2rfiA 285 1.82e-30 2o8jA 281 2.64e-30 1ml9A 302 3.25e-30 b.85.7.1 79282 2igqA 285 3.92e-30 1n3jA 119 1.48e-22 b.85.7.2 79963 2h21A 440 1.05e-15 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 8.35e-14 a.166.1.1,b.85.7.3 87654,87655 1lm5A 214 0.9932 d.211.2.1 74029 1lm7A 248 1.704 d.211.2.1 74031 2ag9A 164 2.688 2ag4A 164 3.804 b.95.1.1 126717 2zbtA 297 5.182 1v6fA 151 5.309 d.109.1.2 108395 1gky 187 6.891 1qf9A 194 7.106 c.37.1.1 31848 2agcA 162 10.28 1f7dA 136 12.27 b.85.4.1 28353 1s31A 273 14.68 2e0qA 104 15.79 1znwA 207 16.87 c.37.1.1 125412 2dkoA 146 17.00 2psoA 237 17.99 1mq7A 154 18.72 b.85.4.1 79404 1h9dA 134 18.86 b.2.5.6 60821 1gpr 162 19.62 2oemA 413 20.39 1nwbA 124 20.47 b.124.1.1 86296 2pcxA 220 20.49 2p52A 196 20.52 1f7sA 139 21.23 d.109.1.2 40857 1nrgA 261 21.70 b.45.1.1 80694 2i6gA 199 22.44 c.66.1.44 137096 2vphA 100 24.16 2cvkA 110 24.34 1xuuA 349 25.54 b.85.1.1,c.1.10.6 116067,116068 1l8fA 207 26.31 b.52.1.1 84537 2yzuA 109 27.03 1jqeA 292 27.32 c.66.1.19 71789 1thxA 115 27.90 c.47.1.1 32732 2eng 210 28.29 1v7pB 128 28.34 d.169.1.1 108407 1jwiB 125 28.53 d.169.1.1 67384 2gh1A 301 28.81 c.66.1.49 135170 2nv1A 305 29.58 2ac0A 200 30.72 b.2.5.2 126539 2i5oA 39 32.05 1txkA 498 32.25 b.1.18.2,b.30.5.9 107425,107426 2bsyA 278 32.74 b.85.4.1,b.85.4.1 129129,129130 2v74B 346 34.49 1m40A 263 35.11 e.3.1.1 74437 2de6D 115 35.74 3b3fA 341 36.33 1mmqA 170 37.19 d.92.1.11 40396 2pktA 91 37.41 1dnlA 199 38.76 b.45.1.1 25753 1abrB 267 38.89 b.42.2.1,b.42.2.1 25563,25564 1sixA 174 39.15 b.85.4.1 98892 3pte 349 39.44 2iyaA 424 39.73 1uasA 362 39.73 b.71.1.1,c.1.8.1 88388,88389 2fb2A 340 40.00 1gbg 214 41.61 1qxrA 189 41.98 b.82.1.7 96552 1a2vA 655 42.20 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 1f6yA 262 42.55 c.1.21.2 29673 2engA 210 45.67 b.52.1.1 26895 2iuyA 342 45.77 1g8kB 133 45.82 b.33.1.1 24435 2zdrA 349 48.46 1fvrA 327 48.67 d.144.1.7 60047 1k6wA 426 50.23 b.92.1.2,c.1.9.5 68236,68237 2yzrA 330 53.01 2ohcA 289 53.81 2ozfA 92 54.23 1jv4A 162 54.24 b.60.1.1 67343 2rgxA 206 54.43 2j21A 219 56.61 1gprA 162 57.12 b.84.3.1 28267 2fwvA 226 58.81 3cbwA 353 59.03 1v5lA 103 59.09 b.36.1.1 108378 1fvuB 125 60.61 d.169.1.1 42346 2q3gA 89 61.31 2jz8A 87 62.77 1pwgA 349 65.23 e.3.1.1 104340 1on3A 523 65.60 c.14.1.4,c.14.1.4 87107,87108 1n7eA 97 67.74 b.36.1.1 91691 1m4jA 142 67.76 d.109.1.2 78602 1sqhA 312 68.31 d.108.1.5 98966 1cl8A 276 69.49 c.52.1.1 33230 3cebA 194 71.01 1e6cA 173 73.12 c.37.1.2 59296 1j2lA 70 75.05 g.20.1.1 90787 1oqyA 368 76.72 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 2q3xA 171 77.22 1grjA 158 78.36 a.2.1.1,d.26.1.2 15691,38433 1u5xA 140 78.50 b.22.1.1 113055 2ocsA 88 78.81 1vyqA 173 80.06 b.85.4.1 120548 2v90A 96 82.60 2ffuA 501 83.44 3b8bA 292 83.60 1xl7A 612 85.71 c.43.1.3,c.43.1.3 115438,115439 1pyoA 167 87.04 c.17.1.1 95370 1pysA 350 87.96 d.104.1.1 40775 1jj2B 337 88.51 b.43.3.2 63086 2i5nH 258 89.57 b.41.1.1,f.23.10.1 137064,137065 1eaqA 140 89.57 b.2.5.6 76144