# List of top-scoring protein chains for t04-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2r3aA	300	2.48e-32		
2qpwA	149	6.01e-32		
2f69A	261	3.10e-31	b.76.2.1,b.85.7.1	133035,133036
3bo5A	290	8.02e-31		
1n6aA	259	1.18e-30	b.76.2.1,b.85.7.1	80121,80122
2rfiA	285	1.22e-30		
1zkkA	167	1.75e-30		
1ml9A	302	2.10e-30	b.85.7.1	79282
2igqA	285	2.11e-30		
2o8jA	281	2.85e-30		
1n3jA	119	4.12e-23	b.85.7.2	79963
2h21A	440	1.50e-15	a.166.1.1,b.85.7.3	135976,135977
1p0yA	444	2.20e-14	a.166.1.1,b.85.7.3	87654,87655
1lm5A	214	1.431	d.211.2.1	74029
1lm7A	248	2.885	d.211.2.1	74031
2ag9A	164	5.185		
2ag4A	164	5.538	b.95.1.1	126717
1mq7A	154	6.337	b.85.4.1	79404
1f7dA	136	6.655	b.85.4.1	28353
2zbtA	297	6.736		
1gky	187	6.867		
1v6fA	151	8.070	d.109.1.2	108395
1qf9A	194	8.894	c.37.1.1	31848
1h9dA	134	10.39	b.2.5.6	60821
2vphA	100	10.67		
2ozfA	92	14.93		
1gpr	162	16.20		
1nwbA	124	17.66	b.124.1.1	86296
2psoA	237	17.95		
1v5lA	103	19.50	b.36.1.1	108378
1sixA	174	19.96	b.85.4.1	98892
2bsyA	278	20.06	b.85.4.1,b.85.4.1	129129,129130
1g8kB	133	20.16	b.33.1.1	24435
2oemA	413	21.37		
1thxA	115	21.64	c.47.1.1	32732
2cvkA	110	21.68		
2q3gA	89	23.72		
2dkoA	146	23.76		
2agcA	162	24.01		
2v90A	96	25.57		
2e0qA	104	25.80		
1txkA	498	25.82	b.1.18.2,b.30.5.9	107425,107426
2yzuA	109	26.01		
2pktA	91	26.64		
1l8fA	207	26.90	b.52.1.1	84537
1n7eA	97	27.58	b.36.1.1	91691
1a2vA	655	28.66	b.30.2.1,d.17.2.1,d.17.2.1	24416,38059,38060
1cl8A	276	29.40	c.52.1.1	33230
2cmgA	262	29.84		
2p52A	196	30.02		
1mmqA	170	30.33	d.92.1.11	40396
2v74B	346	31.81		
2gh1A	301	31.93	c.66.1.49	135170
1m40A	263	33.02	e.3.1.1	74437
1znwA	207	33.61	c.37.1.1	125412
1fvrA	327	33.82	d.144.1.7	60047
1s31A	273	33.87		
2egoA	96	33.90		
2zdrA	349	34.51		
1jqeA	292	34.71	c.66.1.19	71789
1jv4A	162	36.89	b.60.1.1	67343
1xuuA	349	37.28	b.85.1.1,c.1.10.6	116067,116068
2i5oA	39	37.85		
2pcxA	220	38.86		
1v7pB	128	39.61	d.169.1.1	108407
1rutX	188	40.63	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
2de6D	115	40.75		
1abrB	267	40.76	b.42.2.1,b.42.2.1	25563,25564
2ocsA	88	40.77		
2ohcA	289	41.24		
1q5hA	147	42.20	b.85.4.1	95893
2eng	210	42.46		
2rgxA	206	42.67		
3b3fA	341	44.88		
1f7sA	139	45.08	d.109.1.2	40857
1gprA	162	46.23	b.84.3.1	28267
1jwiB	125	46.23	d.169.1.1	67384
3pte	349	46.97		
2ch8A	201	47.24		
1be9A	119	47.55	b.36.1.1	24774
2nv1A	305	50.50		
1pwgA	349	50.84	e.3.1.1	104340
1xjvA	294	51.12	b.40.4.3,b.40.4.3	115396,115397
2ol1A	147	52.02		
1sqhA	312	53.00	d.108.1.5	98966
2bazA	142	53.26		
2iyaA	424	53.51		
1tz9A	367	54.51	c.1.15.6	107466
2pa1A	87	55.39		
2fwvA	226	56.81		
1e6cA	173	58.76	c.37.1.2	59296
1f6yA	262	59.11	c.1.21.2	29673
1dunA	134	60.65	b.85.4.1	28371
1r94A	118	61.53	b.124.1.1	97251
2i7fA	108	62.05		
1jj2B	337	65.24	b.43.3.2	63086
2rczA	81	65.35		
2ggtA	164	66.67	c.47.1.10	135156
1vr3A	191	66.68	b.82.1.6	120431
2iuyA	342	67.14		
1qcsA	211	67.55	b.52.2.3,d.31.1.1	26927,38461
2qg1A	92	67.94		
1wqjB	80	68.02		
1pyoA	167	68.84	c.17.1.1	95370
1eo9A	209	68.87	b.3.6.1	22731
2huhA	147	69.77		
3cqbA	107	69.90		
2ac0A	200	70.10	b.2.5.2	126539
2q07A	306	70.13		
1vyqA	173	70.49	b.85.4.1	120548
2he4A	90	71.75		
1gln	468	72.22		
1u8fO	335	73.94	c.2.1.3,d.81.1.1	119626,119627
2engA	210	74.22	b.52.1.1	26895
1j2lA	70	75.33	g.20.1.1	90787
1knmA	130	76.41	b.42.2.1	72781
1fvuB	125	78.28	d.169.1.1	42346
2f5yA	91	79.28	b.36.1.1	133015
2jz8A	87	81.08		
2qntA	141	81.14		
1k6wA	426	81.70	b.92.1.2,c.1.9.5	68236,68237
2zbvA	263	82.15		
2qkvA	96	82.16		
1uliA	460	82.41	b.33.1.2,d.129.3.3	107921,107922
2i6gA	199	82.42	c.66.1.44	137096
1u1zA	168	82.77	d.38.1.6	107602
2htaA	309	84.33		
1g9oA	91	84.34	b.36.1.1	60400
1uwcA	261	84.78	c.69.1.17	100101
1wl7A	312	87.23	b.67.2.1	120996
2fb2A	340	87.23		
1nmoA	247	87.75	c.135.1.1	91980
3cbwA	353	87.91