# List of top-scoring protein chains for t04-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 8.73e-30 2r3aA 300 1.33e-29 2rfiA 285 1.88e-28 3bo5A 290 3.06e-28 1ml9A 302 3.15e-28 b.85.7.1 79282 2f69A 261 3.36e-28 b.76.2.1,b.85.7.1 133035,133036 1zkkA 167 4.74e-28 1n6aA 259 6.48e-28 b.76.2.1,b.85.7.1 80121,80122 2igqA 285 7.05e-28 2o8jA 281 7.63e-28 1n3jA 119 6.11e-21 b.85.7.2 79963 2h21A 440 1.02e-15 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 1.44e-14 a.166.1.1,b.85.7.3 87654,87655 1lm5A 214 3.073 d.211.2.1 74029 1tz9A 367 4.326 c.1.15.6 107466 2ozfA 92 4.926 1n7eA 97 6.363 b.36.1.1 91691 2pktA 91 7.266 1f7dA 136 7.876 b.85.4.1 28353 2vphA 100 8.284 2q3gA 89 10.19 1mmqA 170 11.08 d.92.1.11 40396 2v90A 96 11.23 1v6fA 151 11.75 d.109.1.2 108395 1gky 187 12.75 2qkvA 96 14.50 2jilA 97 14.70 1fezA 256 15.78 c.108.1.3 43343 2ocsA 88 19.17 1l1zA 274 19.86 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 2iwnA 97 20.37 1h9dA 134 20.96 b.2.5.6 60821 2awxA 105 22.13 1v5lA 103 22.59 b.36.1.1 108378 1kwaA 88 23.11 b.36.1.1 24772 2fe5A 94 23.48 b.36.1.1 133323 2pa1A 87 24.96 2egoA 96 28.30 2oemA 413 29.21 1ihjA 98 29.42 b.36.1.1 62382 1lm7A 248 31.38 d.211.2.1 74031 3cqbA 107 31.39 2qg1A 92 32.06 1rqlA 267 33.68 c.108.1.3 97750 1qavA 90 35.12 b.36.1.1 24777 2gh1A 301 35.81 c.66.1.49 135170 2f0aA 98 38.23 b.36.1.1 132661 2fsaA 174 38.93 2f5yA 91 39.27 b.36.1.1 133015 2agcA 162 39.39 1g9oA 91 39.77 b.36.1.1 60400 2he4A 90 42.21 2i1nA 102 42.54 1y97A 238 42.63 c.55.3.5 122773 1n9bA 265 42.80 e.3.1.1 85463 1mq7A 154 44.31 b.85.4.1 79404 1sixA 174 45.59 b.85.4.1 98892 2rgxA 206 46.00 2c1iA 431 46.21 c.6.2.3,d.341.1.1 129636,129637 1y4wA 518 46.55 b.29.1.19,b.67.2.3 116470,116471 1qtnB 95 47.18 1knmA 130 47.27 b.42.2.1 72781 2q3wA 111 47.55 b.33.1.1 139813 2ol1A 147 50.32 2uzcA 88 52.23 2ag9A 164 52.35 1zgwA 139 52.76 1l6oA 95 52.95 b.36.1.1 84534 1gpr 162 53.90 1q3oA 109 54.42 b.36.1.1 95700 1nslA 184 54.85 d.108.1.1 86137 2ag4A 164 55.16 b.95.1.1 126717 1jv4A 162 57.09 b.60.1.1 67343 2z10A 194 57.23 2p52A 196 58.07 2i7fA 108 60.18 2i04A 85 60.51 2bazA 142 60.51 1mfgA 95 60.67 b.36.1.1 79043 1yk3A 210 61.23 d.108.1.1 123493 2de6D 115 61.34 2jikA 101 61.79 1rdfA 267 63.20 c.108.1.3 104884 2r78A 117 66.16 1dyoA 160 67.50 b.18.1.7 23771 3bpuA 88 67.92 1ztxE 108 68.69 b.1.18.4 125658 2iwoA 120 69.80 2fcfA 103 70.22 b.36.1.1 133267 1dunA 134 70.83 b.85.4.1 28371 1vh0A 161 71.48 c.116.1.3 100626 2rflA 173 77.19 1r2zA 274 79.45 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 2j43A 219 79.88 1wu2A 396 80.62 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 2b25A 336 80.95 c.66.1.13 127699 1yf2A 425 80.96 d.287.1.2,d.287.1.2 123042,123043 2h2bA 107 81.31 2i5oA 39 81.99 2i6gA 199 83.46 c.66.1.44 137096 2jz8A 87 83.81 1wf7A 103 85.17 b.36.1.1 114577 2a9gA 418 86.46 d.126.1.4 126435 1swvA 267 87.06 c.108.1.3 112134 1xfxO 149 87.21 a.39.1.5 121955 1gouA 116 87.48 d.1.1.2 65429 2rczA 81 87.60