# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 2.38e-29 2r3aA 300 3.02e-29 2f69A 261 4.49e-28 b.76.2.1,b.85.7.1 133035,133036 2rfiA 285 4.88e-28 1zkkA 167 6.17e-28 3bo5A 290 7.61e-28 2igqA 285 8.71e-28 2o8jA 281 1.43e-27 1ml9A 302 2.24e-27 b.85.7.1 79282 1n6aA 259 2.25e-27 b.76.2.1,b.85.7.1 80121,80122 1n3jA 119 1.02e-20 b.85.7.2 79963 2h21A 440 1.19e-13 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 1.66e-13 a.166.1.1,b.85.7.3 87654,87655 1lm5A 214 3.060 d.211.2.1 74029 2zbtA 297 3.113 2i6gA 199 4.656 c.66.1.44 137096 1lm7A 248 5.516 d.211.2.1 74031 1h9dA 134 9.066 b.2.5.6 60821 2nv1A 305 10.14 3cqbA 107 11.01 1tz9A 367 12.48 c.1.15.6 107466 1f6yA 262 12.68 c.1.21.2 29673 1y4wA 518 14.11 b.29.1.19,b.67.2.3 116470,116471 1y97A 238 14.96 c.55.3.5 122773 2p52A 196 15.04 2iorA 235 15.21 1ybiA 288 15.34 3be4A 217 16.92 2gh1A 301 17.90 c.66.1.49 135170 3tglA 269 20.63 c.69.1.17 34733 1jztA 246 20.64 c.104.1.1 63319 1hyoA 421 23.79 b.34.8.1,d.177.1.1 59001,59002 1on3A 523 24.06 c.14.1.4,c.14.1.4 87107,87108 1gpr 162 24.32 2v90A 96 25.62 2p7iA 250 25.88 2yzrA 330 27.85 1mq7A 154 29.87 b.85.4.1 79404 2ozfA 92 30.16 2q28A 564 30.40 2z10A 194 30.58 1qexA 288 31.11 b.32.1.1 24425 1eaqA 140 32.58 b.2.5.6 76144 2v74B 346 33.78 1txkA 498 33.86 b.1.18.2,b.30.5.9 107425,107426 1nt2A 210 34.02 c.66.1.3 86149 1jqeA 292 39.53 c.66.1.19 71789 1wehA 171 39.91 c.129.1.1 114551 2q3gA 89 40.58 1f7dA 136 43.16 b.85.4.1 28353 1gmyA 261 43.40 d.3.1.1 76236 2ag4A 164 43.68 b.95.1.1 126717 1v6fA 151 44.34 d.109.1.2 108395 1theA 260 44.37 d.3.1.1 37056 1uasA 362 47.46 b.71.1.1,c.1.8.1 88388,88389 2iyaA 424 47.94 1x0pA 143 47.95 d.58.10.2 121552 1d8wA 426 48.66 c.1.15.2 29394 2ag9A 164 49.10 1o7eA 276 50.01 e.3.1.1 92622 1d2mA 665 50.40 c.37.1.19,c.37.1.19 32417,32418 1l1zA 274 50.72 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 2gsoA 393 51.77 1exbA 332 52.05 c.1.7.1 28666 1nslA 184 52.10 d.108.1.1 86137 2zdrA 349 52.21 1ukzA 203 53.32 c.37.1.1 31840 2i1nA 102 53.39 2rgxA 206 53.74 1akyA 220 56.46 c.37.1.1,g.41.2.1 31896,45197 1gcuA 295 56.70 c.2.1.3,d.81.1.4 30063,39978 1v4vA 376 58.38 c.87.1.3 100313 2de6A 392 58.65 b.33.1.2,d.129.3.3 131415,131416 1abrB 267 58.83 b.42.2.1,b.42.2.1 25563,25564 1pjjA 271 58.93 a.156.1.2,b.113.1.1,g.39.1.8 104164,104165,104166 2f9fA 177 59.48 c.87.1.8 133161 2psoA 237 60.14 2ae6A 166 60.51 d.108.1.1 126600 2awxA 105 60.88 1q5hA 147 61.45 b.85.4.1 95893 2fe5A 94 62.77 b.36.1.1 133323 2jilA 97 63.15 2ac0A 200 63.37 b.2.5.2 126539 1gky 187 63.69 1xdzA 240 64.83 c.66.1.20 115196 1gprA 162 65.00 b.84.3.1 28267 1f7sA 139 66.02 d.109.1.2 40857 1ad1A 266 67.37 c.1.21.1 29668 1g8kB 133 68.98 b.33.1.1 24435 2fk9A 157 69.10 2prvA 153 69.63 2zbvA 263 70.87 1kbpA 432 71.60 b.1.12.1,d.159.1.1 22349,42068 2f5yA 91 72.03 b.36.1.1 133015 2p9oA 169 73.96 2egoA 96 74.23 1vl5A 260 75.28 c.66.1.41 108720 1nmoA 247 75.53 c.135.1.1 91980 1qamA 244 75.65 c.66.1.24 34220 1ofgA 381 80.32 c.2.1.3,d.81.1.5 30064,39979 1v88A 130 80.55 b.55.1.1 108423 2qg1A 92 81.28 1sixA 174 81.81 b.85.4.1 98892 1ztxE 108 86.88 b.1.18.4 125658 2pktA 91 87.75 2pn0A 141 88.30 1p63A 144 88.76 b.42.1.1 94153 1qstA 160 89.38 d.108.1.1 40804