# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r3aA 300 3.89e-15 2igqA 285 6.77e-15 2rfiA 285 6.78e-15 2o8jA 281 8.16e-15 2qpwA 149 2.83e-14 3bo5A 290 3.12e-14 1zkkA 167 6.90e-14 1ml9A 302 2.88e-13 b.85.7.1 79282 2f69A 261 8.44e-13 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 2.19e-12 b.76.2.1,b.85.7.1 80121,80122 1n3jA 119 1.08e-07 b.85.7.2 79963 1p0yA 444 3.87e-05 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 0.000197 a.166.1.1,b.85.7.3 135976,135977 2q3gA 89 3.401 2iorA 235 4.344 2v90A 96 4.399 2fcfA 103 4.677 b.36.1.1 133267 2egoA 96 5.369 2pktA 91 5.725 2uzcA 88 6.865 2h2bA 107 7.834 2pa1A 87 9.352 2qt5A 200 9.842 2eb4A 267 9.917 2f0aA 98 10.83 b.36.1.1 132661 2rczA 81 11.01 2i1nA 102 11.10 1qavA 90 14.23 b.36.1.1 24777 2h3lA 103 14.60 b.36.1.1 136046 2ftsA 419 15.04 b.85.6.1,b.103.1.1,c.57.1.2 134079,134080,134081 2i04A 85 16.32 2ozfA 92 16.53 1ej1A 190 16.71 d.86.1.1 40144 2iwxA 214 17.31 d.122.1.1 137758 2ocsA 88 19.79 1v5lA 103 20.81 b.36.1.1 108378 1q3oA 109 20.83 b.36.1.1 95700 2ozpA 345 20.93 1wf7A 103 21.02 b.36.1.1 114577 2qg1A 92 21.15 2iwoA 120 21.76 2qkvA 96 21.88 1g9oA 91 22.46 b.36.1.1 60400 1ihjA 98 22.98 b.36.1.1 62382 2fe5A 94 23.90 b.36.1.1 133323 2he4A 90 24.79 2gzvA 114 25.31 2awxA 105 26.43 2jilA 97 27.22 1qpxA 218 28.76 b.1.11.1,b.7.2.1 22318,23200 1nf3C 128 29.91 b.36.1.1 85596 3bpuA 88 30.47 3beuA 224 31.57 1inlA 296 32.77 c.66.1.17 66220 1pj5A 830 33.35 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1ov3A 138 34.98 b.34.2.1,b.34.2.1 87451,87452 2c1wA 292 35.25 d.294.1.1 129644 1dqtA 117 35.86 b.1.1.1 20653 1qy5A 269 37.35 d.122.1.1 96573 1y8oA 419 40.38 2breA 219 40.75 d.122.1.1 128994 2reyA 100 42.84 1hs6A 611 43.27 a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1g8lA 411 44.26 b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2vphA 100 46.64 1lufA 343 47.20 d.144.1.7 78223 1wosA 364 47.49 b.44.2.1,d.250.1.1 109468,109469 1g79A 218 48.35 b.45.1.1 25752 2dvkA 188 49.75 2iwnA 97 49.94 2evbA 74 50.01 2f5yA 91 52.80 b.36.1.1 133015 2opgA 98 54.54 1s98A 107 55.91 b.124.1.1 105377 2jikA 101 57.91 1f7dA 136 58.90 b.85.4.1 28353 1a1x 108 59.20 1l6oA 95 61.24 b.36.1.1 84534 1r6jA 82 63.68 b.36.1.1 97151 1n7eA 97 66.21 b.36.1.1 91691 1mfgA 95 68.03 b.36.1.1 79043 1x45A 98 69.91 b.36.1.1 121679 2btzA 394 70.77 2nqrA 411 74.59 b.85.6.1,b.103.1.1,c.57.1.2 138490,138491,138492 2c6uA 122 77.73 3ceyA 474 78.53 2ol1A 147 79.01 2ns9A 157 81.18 1brwA 433 85.21 a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1u9yA 284 88.08 c.61.1.2,c.61.1.2 119655,119656 2he2A 102 88.16 2c78A 405 88.89 b.43.3.1,b.44.1.1,c.37.1.8 130037,130038,130039 1kwaA 88 89.49 b.36.1.1 24772