Best Alignments for TR435

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2qpwA	3.6040e-23	2qpwA/TR435-2qpwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2rfiA	1.0565e-21	2rfiA/TR435-2rfiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o8jA	1.1938e-21	2o8jA/TR435-2o8jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bo5A	5.2157e-21	3bo5A/TR435-3bo5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2igqA	5.9720e-21	2igqA/TR435-2igqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2r3aA	7.8378e-21	2r3aA/TR435-2r3aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zkkA	5.7474e-20	1zkkA/TR435-1zkkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ml9A	2.6249e-19	1ml9A/TR435-1ml9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.85.7.1
2f69A	3.1011e-19	2f69A/TR435-2f69A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.76.2.1 b.85.7.1
1n6aA	3.1395e-19	1n6aA/TR435-1n6aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.76.2.1 b.85.7.1
2h21A	5.1647e-10	2h21A/TR435-2h21A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.166.1.1 b.85.7.3
1p0yA	1.1267e-09	1p0yA/TR435-1p0yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.166.1.1 b.85.7.3
1n3jA	4.6758e-08	1n3jA/TR435-1n3jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.85.7.2
1lm5A	1.3220e+01	1lm5A/TR435-1lm5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.211.2.1
2ag4A	2.5034e+01	2ag4A/TR435-2ag4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.95.1.1
1lm7A	2.5559e+01	1lm7A/TR435-1lm7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.211.2.1
1vkkA	3.7511e+01	1vkkA/TR435-1vkkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.109.1.2
2pn1A	5.0163e+01	2pn1A/TR435-2pn1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1gpr	5.6413e+01	1gpr/TR435-1gpr-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2ag9A	5.8227e+01	2ag9A/TR435-2ag9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001