Best Alignments for TR435

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2qpwA	5.7765e-22	2qpwA/TR435-2qpwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o8jA	5.4810e-08	2o8jA/TR435-2o8jA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2igqA	6.2449e-08	2igqA/TR435-2igqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2rfiA	7.6133e-08	2rfiA/TR435-2rfiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bo5A	1.1664e-07	3bo5A/TR435-3bo5A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zkkA	2.1110e-06	1zkkA/TR435-1zkkA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1n6aA	6.1232e-06	1n6aA/TR435-1n6aA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.76.2.1 b.85.7.1
1n3jA	6.2355e-06	1n3jA/TR435-1n3jA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.85.7.2
1ml9A	1.7775e-05	1ml9A/TR435-1ml9A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.85.7.1
2f69A	5.5019e-05	2f69A/TR435-2f69A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.76.2.1 b.85.7.1
2h21A	7.6754e-01	2h21A/TR435-2h21A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.166.1.1 b.85.7.3
2dtcA	4.8397e+00	2dtcA/TR435-2dtcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1p0yA	8.2141e+00	1p0yA/TR435-1p0yA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.166.1.1 b.85.7.3
1u5fA	9.0096e+00	1u5fA/TR435-1u5fA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.55.1.1
2agcA	1.0305e+01	2agcA/TR435-2agcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2p0dA	1.0879e+01	2p0dA/TR435-2p0dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1u5dA	1.2199e+01	1u5dA/TR435-1u5dA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.55.1.1
1btn	1.4754e+01	1btn/TR435-1btn-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1btnA	1.7848e+01	1btnA/TR435-1btnA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.55.1.1
1v7rA	1.8217e+01	1v7rA/TR435-1v7rA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	c.51.4.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001