# List of top-scoring protein chains for TR435.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	1.61e-11		
2jv0A	163	1.78e-11		
2o8jA	281	0.02282		
2rfiA	285	0.2830		
3bo5A	290	4.847		
1mvhA	299	6.901	b.85.7.1	79500
1n3jA	119	8.970	b.85.7.2	79963
2bqzA	161	10.37		
1zkkA	167	10.78		
1wjmA	123	27.28	b.55.1.1	114702
1ml9A	302	27.57	b.85.7.1	79282
2a6zA	222	41.62	b.29.1.13	126319
2a6yA	256	49.57	b.29.1.13	126318
2r3aA	300	54.73		
3b4wA	495	56.21		
1troA	108	76.77	a.4.12.1	19011
1x3qA	57	77.21	b.34.13.2	121669