# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 8.38e-23 2o8jA 281 3.38e-07 2igqA 285 4.79e-07 2rfiA 285 5.77e-06 1zkkA 167 6.63e-06 3bo5A 290 7.00e-06 1n6aA 259 5.00e-05 b.76.2.1,b.85.7.1 80121,80122 1ml9A 302 0.000220 b.85.7.1 79282 2f69A 261 0.000340 b.76.2.1,b.85.7.1 133035,133036 1n3jA 119 0.001003 b.85.7.2 79963 2p0dA 129 0.6971 2h21A 440 1.091 a.166.1.1,b.85.7.3 135976,135977 1u5fA 148 1.238 b.55.1.1 119542 2agcA 162 1.376 1btnA 106 2.022 b.55.1.1 26952 1t92A 116 2.337 d.24.1.3 112326 1kz7A 353 2.514 a.87.1.1,b.55.1.1 73333,73334 1r88A 280 2.984 c.69.1.3 97219 1v7rA 186 3.216 c.51.4.1 100482 1p0yA 444 3.373 a.166.1.1,b.85.7.3 87654,87655 2j3xA 431 3.484 1dbhA 354 3.570 a.87.1.1,b.55.1.1 18514,26967 1btn 106 3.965 2dtcA 126 4.050 1xy7A 166 5.352 d.32.1.9 116215 1giqA 413 5.963 d.166.1.1,d.166.1.1 76224,76225 1kjwA 295 9.569 b.34.2.1,c.37.1.1 68643,68644 1b7jA 66 12.07 b.85.1.1 28283 2ag9A 164 13.07 2z0qA 346 13.46 1upqA 123 14.27 b.55.1.1 113392 1hrdA 449 14.82 c.2.1.7,c.58.1.1 30219,33867 2acoA 173 15.73 1ucsA 64 16.69 b.85.1.1 88466 1u5dA 108 17.69 b.55.1.1 119536 2ohcA 289 18.73 1y55X 126 19.02 1rfeA 162 19.56 b.45.1.1 111796 2exnA 136 19.58 b.165.1.1 132562 1pls 113 19.81 2ch4W 151 20.12 b.40.7.1 130451 1zy9A 564 21.53 b.30.5.11,c.1.8.13 125813,125814 2a6zA 222 21.95 b.29.1.13 126319 1bdfA 235 22.05 d.74.3.1,d.181.1.1 39727,42602 1b7iA 66 23.01 b.85.1.1 28288 1ki1B 352 24.54 a.87.1.1,b.55.1.1 72497,72498 1pmyA 123 25.65 b.6.1.1 22888 2iu8A 374 25.68 1who 96 26.93 1tufA 434 26.98 b.49.2.3,c.1.6.1 107335,107336 1kexA 155 27.52 b.18.1.2 77350 1gydB 315 27.67 b.67.2.1 70751 1zm0A 114 28.54 b.55.1.1 125276 1twiA 434 29.56 b.49.2.3,c.1.6.1 107399,107400 2gc9A 179 34.31 b.60.1.6 134972 1b7kA 66 34.34 b.85.1.1 28306 1ywsA 82 36.01 g.41.17.1 124163 1b26A 416 36.01 c.2.1.7,c.58.1.1 30232,33880 1qqgA 264 36.05 b.55.1.2,b.55.1.2 26987,26988 2cfuA 658 36.54 2geyA 158 36.59 1hg7A 66 37.60 b.85.1.1 28280 2eng 210 37.83 1yopA 83 38.22 g.41.17.1 123782 2i5fA 109 38.23 1l6xA 207 39.62 b.1.1.2,b.1.1.2 73642,73643 1btkA 169 40.23 b.55.1.1 26959 2dc0A 434 40.84 3bk5A 237 41.76 1mrjA 247 44.29 d.165.1.1 42177 2dfkA 402 45.58 1kafA 108 46.05 d.199.1.1 68372 2p8gA 162 48.63 1erw 105 51.91 1nxmA 197 52.93 b.82.1.1 86385 1txdA 385 53.11 a.87.1.1,b.55.1.1 107422,107423 1xx0A 127 53.44 b.55.1.1 122412 2nzhA 113 54.14 1b3bA 415 54.28 c.2.1.7,c.58.1.1 30244,33892 1v61A 132 55.66 b.55.1.1 108389 1ao7B 100 56.62 b.1.1.2 20697 1bgvA 449 56.69 c.2.1.7,c.58.1.1 30217,33865 1u2bA 138 56.73 b.55.1.1 119474 1bnbA 38 58.03 g.9.1.1 44592 2chhA 114 58.84 b.115.1.1 130471 2engA 210 59.90 b.52.1.1 26895 1gvfA 286 60.71 c.1.10.2 70599 1x05A 129 61.05 b.55.1.1 121543 1whoA 96 64.29 b.7.3.1 23215 1mo7A 213 66.24 d.220.1.1 85028 1wqjB 80 67.40 1m9zA 111 67.41 g.7.1.3 78881 2e70A 71 67.98 2pdrA 149 68.40 1jxmA 301 68.48 b.34.2.1,c.37.1.1 67420,67421 2i9uA 439 70.44 1w9zA 283 70.62 1z0rA 53 72.20 b.129.1.3 124326 2crvA 120 72.21 2h8lA 252 72.56 2volA 207 77.84 2dxqA 150 77.84 1v6sA 390 78.82 c.86.1.1 100424 1ntyA 311 79.71 a.87.1.1,b.55.1.1 103873,103874 1o20A 427 80.56 c.82.1.1 86556 2bv4A 113 81.27 2acyA 98 82.86 d.58.10.1 39298 2fm9A 215 84.21 a.257.1.1 133770 2vdvE 246 85.00 3ck6A 252 86.44 1ktzB 122 87.88 g.7.1.3 68868 1o7fA 469 88.59 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1bak 119 88.95 1l8fA 207 88.96 b.52.1.1 84537 2dtqA 223 89.23 b.1.1.2,b.1.1.2 131725,131726