# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 2.91e-22 2igqA 285 3.22e-06 2o8jA 281 4.90e-06 3bo5A 290 2.53e-05 2rfiA 285 2.82e-05 1zkkA 167 0.000134 1n6aA 259 0.000199 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 0.000579 b.76.2.1,b.85.7.1 133035,133036 1n3jA 119 0.000778 b.85.7.2 79963 1ml9A 302 0.001922 b.85.7.1 79282 2agcA 162 1.698 1gydB 315 2.697 b.67.2.1 70751 1t92A 116 3.566 d.24.1.3 112326 2h21A 440 3.877 a.166.1.1,b.85.7.3 135976,135977 1v7rA 186 4.221 c.51.4.1 100482 2dtcA 126 4.321 1u5fA 148 4.534 b.55.1.1 119542 1f3zA 161 5.435 b.84.3.1 28273 1gpr 162 5.746 1gprA 162 7.362 b.84.3.1 28267 2p0dA 129 8.199 1p0yA 444 10.30 a.166.1.1,b.85.7.3 87654,87655 1btnA 106 11.69 b.55.1.1 26952 1giqA 413 13.99 d.166.1.1,d.166.1.1 76224,76225 1l6xA 207 15.17 b.1.1.2,b.1.1.2 73642,73643 2vroA 532 18.38 1r88A 280 18.51 c.69.1.3 97219 1emsA 440 19.30 d.13.1.1,d.160.1.1 37520,42086 1y55X 126 19.38 1btn 106 22.52 1o20A 427 22.77 c.82.1.1 86556 2qe0A 475 23.33 2j3xA 431 25.48 1ao7B 100 27.95 b.1.1.2 20697 1lk2B 99 28.35 b.1.1.2 91058 1bdfA 235 28.89 d.74.3.1,d.181.1.1 39727,42602 1kjvB 100 29.09 b.1.1.2 77423 2volA 207 30.96 1btkA 169 31.62 b.55.1.1 26959 2ag9A 164 33.75 2acoA 173 33.88 1dbhA 354 35.33 a.87.1.1,b.55.1.1 18514,26967 1uzbA 516 35.82 c.82.1.1 100220 2dfkA 402 36.84 2dtqA 223 37.06 b.1.1.2,b.1.1.2 131725,131726 1k5nB 100 38.10 b.1.1.2 77268 2dc0A 434 42.28 1q74A 303 42.57 c.134.1.1 96019 2dynA 122 42.79 b.55.1.1 26957 1b7jA 66 44.08 b.85.1.1 28283 1txdA 385 45.25 a.87.1.1,b.55.1.1 107422,107423 2o2pA 517 46.20 1xy7A 166 46.86 d.32.1.9 116215 1t90A 486 51.02 1u5dA 108 51.66 b.55.1.1 119536 1upqA 123 51.71 b.55.1.1 113392 1hrdA 449 52.05 c.2.1.7,c.58.1.1 30219,33867 2j6gA 266 52.40 2bjkA 516 55.41 1ntyA 311 55.62 a.87.1.1,b.55.1.1 103873,103874 1kz7A 353 55.90 a.87.1.1,b.55.1.1 73333,73334 1ucsA 64 56.89 b.85.1.1 88466 1bnbA 38 58.02 g.9.1.1 44592 1dbqA 289 59.25 c.93.1.1 35666 1jftA 340 60.75 a.35.1.5,c.93.1.1 66652,66653 1i3uA 127 61.27 b.1.1.1 61636 1f89A 291 67.15 d.160.1.1 64988 3bevB 99 67.33 2j6lA 500 67.94 2d4eA 515 68.28 2dreA 180 70.10 2z0qA 346 70.23 2pdrA 149 70.51 2jqoA 108 70.85 1who 96 77.94 2fm9A 215 77.99 a.257.1.1 133770 1fc2D 224 78.40 b.1.1.2,b.1.1.2 21516,21517 1b26A 416 85.57 c.2.1.7,c.58.1.1 30232,33880 1b3bA 415 86.04 c.2.1.7,c.58.1.1 30244,33892 2impA 479 86.06 1kjwA 295 87.83 b.34.2.1,c.37.1.1 68643,68644 1u2bA 138 87.92 b.55.1.1 119474