# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 8.12e-22 2igqA 285 5.02e-06 2o8jA 281 6.61e-06 3bo5A 290 3.82e-05 2rfiA 285 4.00e-05 1zkkA 167 0.000140 1n6aA 259 0.000389 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 0.001368 b.76.2.1,b.85.7.1 133035,133036 1ml9A 302 0.002069 b.85.7.1 79282 1n3jA 119 0.002090 b.85.7.2 79963 2dtcA 126 0.9935 1u5fA 148 1.439 b.55.1.1 119542 2agcA 162 1.887 2p0dA 129 2.261 1gydB 315 2.742 b.67.2.1 70751 1v7rA 186 4.540 c.51.4.1 100482 1btnA 106 6.415 b.55.1.1 26952 2h21A 440 6.922 a.166.1.1,b.85.7.3 135976,135977 1t92A 116 7.120 d.24.1.3 112326 1btkA 169 8.418 b.55.1.1 26959 1f3zA 161 8.896 b.84.3.1 28273 1gpr 162 10.63 1btn 106 11.16 2dfkA 402 12.68 1p0yA 444 12.72 a.166.1.1,b.85.7.3 87654,87655 1ntyA 311 13.22 a.87.1.1,b.55.1.1 103873,103874 1gprA 162 13.83 b.84.3.1 28267 1u5dA 108 14.58 b.55.1.1 119536 1dbhA 354 14.78 a.87.1.1,b.55.1.1 18514,26967 1txdA 385 15.32 a.87.1.1,b.55.1.1 107422,107423 1kz7A 353 17.82 a.87.1.1,b.55.1.1 73333,73334 1upqA 123 19.00 b.55.1.1 113392 1l6xA 207 19.25 b.1.1.2,b.1.1.2 73642,73643 2z0qA 346 20.74 1y55X 126 21.08 1u2bA 138 21.69 b.55.1.1 119474 1giqA 413 24.35 d.166.1.1,d.166.1.1 76224,76225 1o20A 427 24.52 c.82.1.1 86556 2qe0A 475 25.26 2vroA 532 29.28 1lk2B 99 29.66 b.1.1.2 91058 1ao7B 100 31.01 b.1.1.2 20697 1bdfA 235 31.40 d.74.3.1,d.181.1.1 39727,42602 1qqgA 264 32.05 b.55.1.2,b.55.1.2 26987,26988 1pls 113 35.40 2ohcA 289 37.83 1r88A 280 38.02 c.69.1.3 97219 1kjvB 100 38.49 b.1.1.2 77423 1hrdA 449 39.75 c.2.1.7,c.58.1.1 30219,33867 2volA 207 40.61 1k5nB 100 40.86 b.1.1.2 77268 1ki1B 352 42.35 a.87.1.1,b.55.1.1 72497,72498 1fgyA 127 44.18 b.55.1.1 26976 1uzbA 516 44.22 c.82.1.1 100220 2ag9A 164 44.51 1zm0A 114 44.59 b.55.1.1 125276 2dtqA 223 45.32 b.1.1.2,b.1.1.2 131725,131726 2j6gA 266 48.88 1q74A 303 49.31 c.134.1.1 96019 2j3xA 431 50.46 1b7jA 66 50.75 b.85.1.1 28283 1jftA 340 53.09 a.35.1.5,c.93.1.1 66652,66653 1xy7A 166 54.93 d.32.1.9 116215 2o2pA 517 55.57 1b55A 169 56.45 b.55.1.1 26963 2fm9A 215 56.49 a.257.1.1 133770 1dbqA 289 57.21 c.93.1.1 35666 2dynA 122 59.46 b.55.1.1 26957 2i5fA 109 60.33 1bnbA 38 60.38 g.9.1.1 44592 2dc0A 434 61.16 1faoA 126 61.90 b.55.1.1 26974 2bjkA 516 62.03 1emsA 440 63.51 d.13.1.1,d.160.1.1 37520,42086 2vdvE 246 63.99 1t90A 486 66.12 1ucsA 64 67.63 b.85.1.1 88466 2bkfA 87 67.85 d.15.2.2 128699 3bevB 99 70.28 2dreA 180 74.75 2j6lA 500 77.92 2jqoA 108 80.57 2d4eA 515 81.12 1wj6A 101 83.80 d.15.2.2 114693 1eazA 125 88.08 b.55.1.1 70113 2acoA 173 89.08 1e87A 118 89.47 d.169.1.1 42327