# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	4.02e-19		
2igqA	285	3.37e-06		
2o8jA	281	7.01e-06		
2rfiA	285	2.14e-05		
3bo5A	290	3.89e-05		
1zkkA	167	0.000124		
1n6aA	259	0.000351	b.76.2.1,b.85.7.1	80121,80122
2f69A	261	0.000446	b.76.2.1,b.85.7.1	133035,133036
1n3jA	119	0.000811	b.85.7.2	79963
1ml9A	302	0.001033	b.85.7.1	79282
2h21A	440	1.416	a.166.1.1,b.85.7.3	135976,135977
2dtcA	126	2.234		
1v7rA	186	3.639	c.51.4.1	100482
1p0yA	444	7.851	a.166.1.1,b.85.7.3	87654,87655
1u5fA	148	8.560	b.55.1.1	119542
2ohcA	289	8.638		
2fm9A	215	10.06	a.257.1.1	133770
1dbhA	354	10.52	a.87.1.1,b.55.1.1	18514,26967
1gydB	315	10.98	b.67.2.1	70751
2agcA	162	13.11		
2p0dA	129	17.89		
1b7jA	66	19.59	b.85.1.1	28283
1upqA	123	20.03	b.55.1.1	113392
1i3uA	127	20.12	b.1.1.1	61636
1txdA	385	22.76	a.87.1.1,b.55.1.1	107422,107423
2dfkA	402	23.13		
1kz7A	353	28.99	a.87.1.1,b.55.1.1	73333,73334
1qqgA	264	30.33	b.55.1.2,b.55.1.2	26987,26988
1ucsA	64	34.36	b.85.1.1	88466
1r88A	280	40.81	c.69.1.3	97219
2dc0A	434	46.63		
2jqoA	108	48.36		
2ag9A	164	48.52		
1skoB	130	48.56	d.110.7.1	105677
1u2bA	138	48.67	b.55.1.1	119474
1ntyA	311	49.13	a.87.1.1,b.55.1.1	103873,103874
1btnA	106	50.39	b.55.1.1	26952
1b7kA	66	51.90	b.85.1.1	28306
1vetB	125	56.27	d.110.7.1	108554
1btkA	169	57.90	b.55.1.1	26959
1brsD	89	59.44	c.9.1.1	30825
1b7iA	66	60.09	b.85.1.1	28288
1btn	106	61.25		
2fl7A	232	61.68		
1hg7A	66	66.34	b.85.1.1	28280
1ki1B	352	66.92	a.87.1.1,b.55.1.1	72497,72498
1fna	93	68.90		
1k5nB	100	70.91	b.1.1.2	77268
1b27D	90	74.62	c.9.1.1	30840
2dreA	180	75.13		
1b3sD	90	78.64	c.9.1.1	30846
1eazA	125	80.93	b.55.1.1	70113
1faoA	126	83.36	b.55.1.1	26974
1kjvB	100	84.71	b.1.1.2	77423
2daxA	152	87.21		
2ys3A	137	87.81		
2j3xA	431	89.60