# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 3.76e-24 3bo5A 290 2.78e-06 2igqA 285 3.04e-05 1n6aA 259 0.000109 b.76.2.1,b.85.7.1 80121,80122 1zkkA 167 0.000221 1ml9A 302 0.001130 b.85.7.1 79282 2f69A 261 0.002467 b.76.2.1,b.85.7.1 133035,133036 2o8jA 281 0.002529 1n3jA 119 0.003721 b.85.7.2 79963 2rfiA 285 0.02196 2dtcA 126 0.5486 1ntyA 311 0.6835 a.87.1.1,b.55.1.1 103873,103874 1jftA 340 1.460 a.35.1.5,c.93.1.1 66652,66653 2qkpA 151 1.635 2d5lA 706 1.813 1ms9A 648 1.893 b.29.1.15,b.68.1.1 85088,85089 3cb2A 475 1.915 1t92A 116 1.935 d.24.1.3 112326 2cfmA 561 4.015 1u5fA 148 4.133 b.55.1.1 119542 2ys3A 137 4.232 2p0dA 129 5.315 1n1tA 641 5.893 b.29.1.15,b.68.1.1 79821,79822 1f3zA 161 6.430 b.84.3.1 28273 1hwxA 501 6.743 c.2.1.7,c.58.1.1 30250,33898 1gpr 162 7.549 2bm0A 691 7.744 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 1gprA 162 9.724 b.84.3.1 28267 2nutA 769 10.84 1ui7A 638 12.99 b.30.2.1,d.17.2.1,d.17.2.1 99413,99414,99415 1j2zA 270 13.32 b.81.1.1 90805 1w9zA 283 13.51 2imqX 282 13.75 2geeA 203 14.09 1s1mA 545 14.44 c.23.16.1,c.37.1.10 105201,105202 1k3iA 656 14.57 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 1btnA 106 15.52 b.55.1.1 26952 2dreA 180 16.38 1yx2A 365 17.76 1ti6A 875 18.03 b.52.2.2,c.81.1.1 106974,106975 2op6A 152 19.08 1dbhA 354 21.20 a.87.1.1,b.55.1.1 18514,26967 1qf6A 642 21.37 c.51.1.1,d.15.10.1,d.67.1.1,d.104.1.1 33210,39551,39562,40759 2qv2A 342 22.77 1giqA 413 22.83 d.166.1.1,d.166.1.1 76224,76225 2b5tI 432 22.87 e.1.1.1 127905 2impA 479 23.04 1zy9A 564 23.42 b.30.5.11,c.1.8.13 125813,125814 1yr2A 741 26.00 1xizA 159 26.01 d.112.1.1 115375 1btn 106 27.64 2podA 410 27.71 1musA 477 28.00 c.55.3.4 79494 1qfhA 212 29.17 b.1.18.10,b.1.18.10 21893,21894 1wj6A 101 29.63 d.15.2.2 114693 1xsjA 778 30.41 b.150.1.1,b.30.5.11,b.71.1.4,c.1.8.13 115951,115952,115953,115954 1u5dA 108 31.61 b.55.1.1 119536 1bdfA 235 32.65 d.74.3.1,d.181.1.1 39727,42602 1kriA 186 33.78 b.29.1.14 72897 1gowA 489 34.18 c.1.8.4 28981 1btkA 169 34.64 b.55.1.1 26959 1twiA 434 35.28 b.49.2.3,c.1.6.1 107399,107400 2durA 253 35.94 2z20A 432 36.39 1wyuA 438 36.43 c.67.1.7 121452 1vhhA 162 36.84 d.65.1.2 39550 1uf2A 1019 37.04 e.28.1.2 99289 1zpuA 534 39.40 1kyaA 499 39.94 b.6.1.3,b.6.1.3,b.6.1.3 73203,73204,73205 1x31C 206 40.23 1l6xA 207 41.46 b.1.1.2,b.1.1.2 73642,73643 1kz7A 353 41.93 a.87.1.1,b.55.1.1 73333,73334 1euhA 475 45.04 c.82.1.1 35369 1qv9A 283 46.22 c.127.1.1 96356 1iloA 77 47.13 c.47.1.1 66205 1e43A 483 47.67 b.71.1.1,c.1.8.1 59217,59218 1t16A 427 48.10 f.4.3.4 106242 3bqcA 335 48.96 2qe0A 475 49.37 1kjvB 100 50.38 b.1.1.2 77423 1lehA 364 50.61 c.2.1.7,c.58.1.1 30268,33916 2hpuA 175 50.85 1bykA 255 51.46 c.93.1.1 35706 1f1gA 154 51.51 b.1.8.1 76153 1oaoC 729 52.63 e.26.1.3 86746 2bgiA 272 54.38 1bw9A 356 54.89 c.2.1.7,c.58.1.1 30274,33922 1azvA 153 54.93 b.1.8.1 22247 3cmcO 334 56.01 2eceA 462 56.48 1k87A 669 56.76 a.176.1.1,c.1.23.2 77286,77287 2fh5B 214 59.65 c.37.1.8 133478 1ji1A 637 60.17 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 2qytA 317 61.57 1vavA 222 62.84 b.29.1.18 108472 2pgnA 589 63.52 1vl2A 421 64.32 c.26.2.1,d.210.1.1 108708,108709 2acoA 173 65.62 1jatA 155 65.85 d.20.1.1 62818 1j08A 226 69.07 c.47.1.2,c.47.1.2 83855,83856 1fnhA 271 69.12 b.1.2.1,b.1.2.1,b.1.2.1 21976,21977,21978 1upqA 123 69.23 b.55.1.1 113392 1a3aA 148 69.94 d.112.1.1 40917 1ppjB 439 70.46 d.185.1.1,d.185.1.1 104254,104255 2e63A 170 71.25 2r6uA 148 73.16 1u2bA 138 75.25 b.55.1.1 119474 1ipcA 217 75.57 d.86.1.1 71257 2j1vA 151 76.99 2p17A 277 77.32 1l3aA 228 77.94 d.18.1.2 73531 1bu8A 452 77.98 b.12.1.2,c.69.1.19 23647,34795 2bcjB 340 78.81 b.69.4.1 128289 2anpA 291 79.48 c.56.5.4 127056 2dtqA 223 79.49 b.1.1.2,b.1.1.2 131725,131726 1fecA 490 79.67 c.3.1.5,c.3.1.5,d.87.1.1 30489,30490,40176 1qwdA 177 81.06 b.60.1.1 96471 2qedA 258 81.39 1wehA 171 81.97 c.129.1.1 114551 1erjA 393 82.88 b.69.4.1 27660 1q0eA 152 84.63 b.1.8.1 95504 1ef1A 294 84.73 a.11.2.1,b.55.1.5,d.15.1.4 16368,27003,37611 1j0hA 588 85.99 b.1.18.2,b.71.1.1,c.1.8.1 77027,77028,77029 1e9pA 151 86.92 b.1.8.1 22215 1gt1A 159 89.15 b.60.1.1 90515 2bkfA 87 89.17 d.15.2.2 128699