# List of top-scoring protein chains for t2k-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 1.12e-21 2igqA 285 5.31e-06 2o8jA 281 5.42e-06 3bo5A 290 2.98e-05 2rfiA 285 3.11e-05 1zkkA 167 0.000226 1n6aA 259 0.000345 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 0.000500 b.76.2.1,b.85.7.1 133035,133036 1ml9A 302 0.000663 b.85.7.1 79282 1n3jA 119 0.001811 b.85.7.2 79963 2agcA 162 0.5917 2h21A 440 1.511 a.166.1.1,b.85.7.3 135976,135977 1u5fA 148 1.701 b.55.1.1 119542 1v7rA 186 1.933 c.51.4.1 100482 2dtcA 126 2.291 2p0dA 129 2.963 1btnA 106 7.690 b.55.1.1 26952 1t92A 116 8.059 d.24.1.3 112326 2ag9A 164 10.29 1giqA 413 11.68 d.166.1.1,d.166.1.1 76224,76225 1p0yA 444 12.78 a.166.1.1,b.85.7.3 87654,87655 1r88A 280 12.98 c.69.1.3 97219 1btn 106 13.67 2j3xA 431 15.05 1u5dA 108 15.36 b.55.1.1 119536 1dbhA 354 15.59 a.87.1.1,b.55.1.1 18514,26967 1gydB 315 18.10 b.67.2.1 70751 1hrdA 449 22.68 c.2.1.7,c.58.1.1 30219,33867 1emsA 440 24.14 d.13.1.1,d.160.1.1 37520,42086 1o20A 427 25.47 c.82.1.1 86556 1kz7A 353 26.17 a.87.1.1,b.55.1.1 73333,73334 1l6xA 207 28.53 b.1.1.2,b.1.1.2 73642,73643 1qqgA 264 34.07 b.55.1.2,b.55.1.2 26987,26988 1btkA 169 34.22 b.55.1.1 26959 1y55X 126 36.38 1lk2B 99 37.37 b.1.1.2 91058 1xy7A 166 37.65 d.32.1.9 116215 2z0qA 346 39.63 2dfkA 402 40.06 1b7jA 66 42.41 b.85.1.1 28283 2qe0A 475 43.01 1ao7B 100 43.46 b.1.1.2 20697 1kjvB 100 44.46 b.1.1.2 77423 2dc0A 434 45.71 2acoA 173 45.76 2j6gA 266 46.92 2vroA 532 46.96 2volA 207 47.39 1who 96 47.61 1uzbA 516 48.90 c.82.1.1 100220 2pdrA 149 49.28 1zm0A 114 49.56 b.55.1.1 125276 1k5nB 100 52.12 b.1.1.2 77268 1u2bA 138 52.22 b.55.1.1 119474 2ohcA 289 52.26 1gpr 162 53.15 2dtqA 223 54.15 b.1.1.2,b.1.1.2 131725,131726 2a6zA 222 55.80 b.29.1.13 126319 1gprA 162 61.80 b.84.3.1 28267 1ucsA 64 64.06 b.85.1.1 88466 2i5fA 109 65.17 1ki1B 352 65.43 a.87.1.1,b.55.1.1 72497,72498 1b26A 416 67.07 c.2.1.7,c.58.1.1 30232,33880 1pls 113 67.45 1b3bA 415 67.52 c.2.1.7,c.58.1.1 30244,33892 1bnbA 38 68.22 g.9.1.1 44592 1t90A 486 68.96 1fc2D 224 69.20 b.1.1.2,b.1.1.2 21516,21517 1ntyA 311 69.35 a.87.1.1,b.55.1.1 103873,103874 1upqA 123 70.10 b.55.1.1 113392 1txdA 385 71.86 a.87.1.1,b.55.1.1 107422,107423 1q74A 303 72.32 c.134.1.1 96019 2fm9A 215 72.75 a.257.1.1 133770 2j6lA 500 75.39 1f3zA 161 79.62 b.84.3.1 28273 1lbqA 362 80.61 c.92.1.1 77877 1jftA 340 80.92 a.35.1.5,c.93.1.1 66652,66653 1q0rA 298 80.95 c.69.1.28 95508 1kjwA 295 82.75 b.34.2.1,c.37.1.1 68643,68644 1fc1A 224 82.77 b.1.1.2,b.1.1.2 21520,21521 1ywsA 82 82.95 g.41.17.1 124163 1i3uA 127 83.05 b.1.1.1 61636 2o2pA 517 85.45 2bjkA 516 86.13 1whoA 96 88.43 b.7.3.1 23215 2ntpA 342 89.11 1vhhA 162 89.58 d.65.1.2 39550