# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 1.39e-21 2igqA 285 3.18e-06 2o8jA 281 4.63e-06 2rfiA 285 1.94e-05 3bo5A 290 2.18e-05 1zkkA 167 8.32e-05 1n6aA 259 0.000192 b.76.2.1,b.85.7.1 80121,80122 2f69A 261 0.000633 b.76.2.1,b.85.7.1 133035,133036 1ml9A 302 0.000665 b.85.7.1 79282 1n3jA 119 0.001530 b.85.7.2 79963 2agcA 162 1.423 2h21A 440 1.574 a.166.1.1,b.85.7.3 135976,135977 1v7rA 186 3.307 c.51.4.1 100482 1u5fA 148 3.709 b.55.1.1 119542 1t92A 116 4.042 d.24.1.3 112326 1gydB 315 6.366 b.67.2.1 70751 2p0dA 129 6.503 2dtcA 126 6.612 1giqA 413 7.360 d.166.1.1,d.166.1.1 76224,76225 2j3xA 431 10.51 1p0yA 444 10.59 a.166.1.1,b.85.7.3 87654,87655 2ag9A 164 12.28 1r88A 280 12.99 c.69.1.3 97219 1btnA 106 15.02 b.55.1.1 26952 1dbhA 354 19.08 a.87.1.1,b.55.1.1 18514,26967 1l6xA 207 22.31 b.1.1.2,b.1.1.2 73642,73643 1kz7A 353 22.56 a.87.1.1,b.55.1.1 73333,73334 2qe0A 475 26.65 1btn 106 27.89 2dc0A 434 28.02 1txdA 385 28.44 a.87.1.1,b.55.1.1 107422,107423 1kjvB 100 29.33 b.1.1.2 77423 1bdfA 235 29.79 d.74.3.1,d.181.1.1 39727,42602 1o20A 427 29.92 c.82.1.1 86556 2z0qA 346 31.58 1hrdA 449 32.02 c.2.1.7,c.58.1.1 30219,33867 1lk2B 99 34.86 b.1.1.2 91058 1k5nB 100 35.79 b.1.1.2 77268 1b7jA 66 35.97 b.85.1.1 28283 1ao7B 100 37.28 b.1.1.2 20697 1u5dA 108 37.94 b.55.1.1 119536 1y55X 126 37.98 1f3zA 161 38.73 b.84.3.1 28273 1gpr 162 38.93 2dfkA 402 39.76 1jftA 340 40.10 a.35.1.5,c.93.1.1 66652,66653 2vroA 532 40.23 2j6gA 266 40.65 1uzbA 516 40.74 c.82.1.1 100220 1t90A 486 44.11 2acoA 173 44.23 1dbqA 289 46.63 c.93.1.1 35666 2o2pA 517 47.22 1qqgA 264 48.03 b.55.1.2,b.55.1.2 26987,26988 1gprA 162 49.16 b.84.3.1 28267 2a6zA 222 49.26 b.29.1.13 126319 1btkA 169 50.92 b.55.1.1 26959 1upqA 123 51.46 b.55.1.1 113392 2ohcA 289 53.63 2dtqA 223 54.65 b.1.1.2,b.1.1.2 131725,131726 1u2bA 138 54.82 b.55.1.1 119474 1q74A 303 55.20 c.134.1.1 96019 1ntyA 311 55.57 a.87.1.1,b.55.1.1 103873,103874 2bjkA 516 59.03 1ucsA 64 60.67 b.85.1.1 88466 1emsA 440 62.07 d.13.1.1,d.160.1.1 37520,42086 1xy7A 166 62.23 d.32.1.9 116215 1bnbA 38 65.12 g.9.1.1 44592 2fm9A 215 65.52 a.257.1.1 133770 1fc2D 224 67.06 b.1.1.2,b.1.1.2 21516,21517 1ki1B 352 68.05 a.87.1.1,b.55.1.1 72497,72498 2volA 207 69.26 1b2pA 119 70.57 b.78.1.1 27998 2pdrA 149 72.91 1who 96 75.19 2impA 479 79.99 2d4eA 515 85.14 3bevB 99 85.21 1v61A 132 85.23 b.55.1.1 108389 1b3bA 415 86.96 c.2.1.7,c.58.1.1 30244,33892 2dreA 180 88.05 1b26A 416 89.94 c.2.1.7,c.58.1.1 30232,33880