# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	2.29e-21		
2igqA	285	8.36e-06		
1zkkA	167	1.32e-05		
2o8jA	281	1.40e-05		
3bo5A	290	3.75e-05		
2rfiA	285	0.000100		
1n6aA	259	0.000273	b.76.2.1,b.85.7.1	80121,80122
1n3jA	119	0.000281	b.85.7.2	79963
1ml9A	302	0.000405	b.85.7.1	79282
2f69A	261	0.000575	b.76.2.1,b.85.7.1	133035,133036
2h21A	440	1.123	a.166.1.1,b.85.7.3	135976,135977
2p0dA	129	1.538		
2dtcA	126	2.577		
1u5fA	148	6.196	b.55.1.1	119542
2agcA	162	7.088		
1p0yA	444	8.732	a.166.1.1,b.85.7.3	87654,87655
2dreA	180	14.78		
2dfkA	402	15.16		
1fna	93	15.49		
1btnA	106	15.56	b.55.1.1	26952
2fm9A	215	15.56	a.257.1.1	133770
1v7rA	186	16.76	c.51.4.1	100482
1r88A	280	17.04	c.69.1.3	97219
2geeA	203	22.60		
1txdA	385	22.83	a.87.1.1,b.55.1.1	107422,107423
1u5dA	108	23.94	b.55.1.1	119536
2ohcA	289	25.41		
1b7jA	66	25.70	b.85.1.1	28283
1btn	106	25.78		
1ten	90	25.99		
2fk9A	157	30.17		
1pls	113	34.68		
1uyrA	737	35.31	c.14.1.4,c.14.1.4	100188,100189
1ucsA	64	35.51	b.85.1.1	88466
2fnbA	95	36.06	b.1.2.1	21979
1upqA	123	36.40	b.55.1.1	113392
1btkA	169	36.43	b.55.1.1	26959
1bu8A	452	37.21	b.12.1.2,c.69.1.19	23647,34795
1bavA	309	38.24	c.56.5.1	33806
1aye	401	40.60		
1dbhA	354	41.09	a.87.1.1,b.55.1.1	18514,26967
1zy9A	564	50.44	b.30.5.11,c.1.8.13	125813,125814
1x31D	99	50.90		
2ag9A	164	52.32		
1ywsA	82	55.57	g.41.17.1	124163
1i3uA	127	56.30	b.1.1.1	61636
1ulrA	88	56.69	d.58.10.1	113283
2z0qA	346	56.81		
1ntyA	311	58.37	a.87.1.1,b.55.1.1	103873,103874
1t92A	116	59.04	d.24.1.3	112326
1b7kA	66	60.60	b.85.1.1	28306
1b7iA	66	64.67	b.85.1.1	28288
1faoA	126	64.83	b.55.1.1	26974
1e87A	118	66.23	d.169.1.1	42327
2vrwB	406	67.75		
1hg7A	66	73.52	b.85.1.1	28280
2vroA	532	75.64		
1ka8A	100	76.87	a.4.5.20	72241
2uz0A	263	77.64		
1d2tA	231	78.27	a.111.1.1	19052
1kz7A	353	79.44	a.87.1.1,b.55.1.1	73333,73334
2ch4W	151	79.98	b.40.7.1	130451
1gydB	315	81.91	b.67.2.1	70751
1w2iA	91	82.93	d.58.10.1	109127
2jqoA	108	83.63		
1u2bA	138	87.90	b.55.1.1	119474
1fnhA	271	89.21	b.1.2.1,b.1.2.1,b.1.2.1	21976,21977,21978
1emsA	440	89.50	d.13.1.1,d.160.1.1	37520,42086