# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 2.44e-16 1zkkA 167 6.89e-07 2igqA 285 8.24e-07 2o8jA 281 2.80e-06 2rfiA 285 6.49e-06 3bo5A 290 2.70e-05 2f69A 261 9.54e-05 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 0.000253 b.76.2.1,b.85.7.1 80121,80122 1ml9A 302 0.001488 b.85.7.1 79282 1n3jA 119 0.001560 b.85.7.2 79963 2aefA 234 4.058 1vctA 205 4.238 a.7.12.1,d.286.1.1 119986,119987 1gkfB 557 5.692 1hx6A 394 6.120 b.121.2.1,b.121.2.1 58995,58996 1mt6A 280 6.334 b.76.2.1,b.85.7.1 79446,79447 1ajqB 557 7.049 1e3aB 560 7.140 1gk9B 557 7.207 1pytA 94 8.182 d.58.3.1 39064 1z4rA 168 10.88 d.108.1.1 124444 2ag9A 164 11.16 1dutA 133 11.41 b.85.4.1 28355 1b7jA 66 12.17 b.85.1.1 28283 2ouaA 188 12.29 1lnqA 336 12.45 c.2.1.9,d.286.1.1,f.14.1.1 111576,111577,74050 1boy 219 12.76 2geeA 203 14.45 1ucsA 64 15.09 b.85.1.1 88466 1g2lA 235 15.27 b.47.1.2 65112 3c8cA 240 15.68 1hg7A 66 16.02 b.85.1.1 28280 1pcaA 95 17.03 d.58.3.1 39063 2rdkA 109 17.04 1b7kA 66 19.50 b.85.1.1 28306 2z8fA 412 24.11 3cpnA 330 24.40 2ohcA 289 24.52 1a21A 219 24.80 b.1.2.1,b.1.2.1 21967,21968 2qg3A 208 26.20 2vsmB 140 26.39 2hd3A 103 26.50 1f7dA 136 27.48 b.85.4.1 28353 4dpvZ 584 28.08 b.121.5.2 23377 2ea3A 189 28.71 2dvkA 188 30.05 1m2tB 263 36.30 b.42.2.1,b.42.2.1 84762,84763 1a7oH 116 36.98 b.1.1.1 19943 2a9mH 126 37.02 1khxA 227 38.12 b.26.1.1 68631 1i6uA 130 38.42 d.140.1.1 61850 1jovA 270 40.71 b.30.5.7 84192 1z8gA 372 40.78 b.47.1.2,d.170.1.2 124697,124698 2vd8A 391 40.79 1t8oA 245 43.30 b.47.1.2 119187 1b7iA 66 43.72 b.85.1.1 28288 2ol1A 147 43.80 1luzA 88 44.16 b.40.4.5 74271 1tulA 108 48.16 b.85.5.1 28373 1fm2B 520 48.29 3c0tA 207 48.80 2aaiB 262 48.98 b.42.2.1,b.42.2.1 25561,25562 2glwA 92 49.88 2h2wA 312 50.15 1o9yA 84 50.50 b.139.1.1 92692 2pnlA 203 50.86 1sjiA 350 51.66 1tl2A 236 52.31 b.67.1.1 27541 1regX 122 54.57 d.58.27.1 39406 2bokA 241 55.02 b.47.1.2 128916 2e3nA 255 55.13 2bsyA 278 55.61 b.85.4.1,b.85.4.1 129129,129130 1pdr 99 56.72 1s1mA 545 58.55 c.23.16.1,c.37.1.10 105201,105202 2bz6H 254 61.28 b.47.1.2 129552 1or0B 528 64.44 1gk1B 522 65.75 1bd0A 388 67.49 b.49.2.2,c.1.6.1 26480,28642 2plgA 163 67.52 2ra6A 166 67.82 2drvA 200 69.25 1a7qH 116 72.11 b.1.1.1 19955 2d1eA 248 73.36 1wcdJ 441 74.79 b.121.4.9 120887 2ocsA 88 75.08 2cas 548 75.21 2hftA 218 75.57 b.1.2.1,b.1.2.1 21951,21952 1hcgA 241 76.63 b.47.1.2 26341 2q4mA 217 77.64 d.23.1.2 139870 1gxyA 226 77.84 d.166.1.3 76380 1q3oA 109 78.03 b.36.1.1 95700 2a9nH 126 78.77 2re9A 181 79.40 1yf5L 254 79.55 c.55.1.11,c.55.1.11 123049,123050 1eu8A 409 79.90 c.94.1.1 59502 2f9nA 245 81.82 2ae5B 528 83.34 1za7A 165 84.35 2b5iB 214 85.17 b.1.2.1,b.1.2.1 127896,127897 1ol0A 121 85.57 b.1.1.1 93296 1eaxA 241 87.82 b.47.1.2 64889 2hjeA 221 88.42 1i8dA 213 89.85 b.43.4.3,b.43.4.3 61953,61954