Best Alignments for TR435

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2rfiA	1.3552e-20	2rfiA/TR435-2rfiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2r3aA	1.4744e-20	2r3aA/TR435-2r3aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1zkkA	1.4991e-20	1zkkA/TR435-1zkkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ml9A	2.8024e-20	1ml9A/TR435-1ml9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.85.7.1
3bo5A	2.9523e-20	3bo5A/TR435-3bo5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2o8jA	3.7259e-20	2o8jA/TR435-2o8jA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qpwA	4.0821e-20	2qpwA/TR435-2qpwA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2igqA	6.5066e-20	2igqA/TR435-2igqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2f69A	3.2203e-19	2f69A/TR435-2f69A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.76.2.1 b.85.7.1
1n6aA	1.2642e-18	1n6aA/TR435-1n6aA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.76.2.1 b.85.7.1
1p0yA	3.4241e-10	1p0yA/TR435-1p0yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.166.1.1 b.85.7.3
2h21A	3.8210e-10	2h21A/TR435-2h21A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.166.1.1 b.85.7.3
1vkkA	7.4296e+00	1vkkA/TR435-1vkkA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.109.1.2
1lm5A	8.2207e+00	1lm5A/TR435-1lm5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.211.2.1
2ag4A	1.2312e+01	2ag4A/TR435-2ag4A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.95.1.1
2pn1A	1.3487e+01	2pn1A/TR435-2pn1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1lm7A	2.7744e+01	1lm7A/TR435-1lm7A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.211.2.1
1rutX	2.9820e+01	1rutX/TR435-1rutX-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3
1dpoA	4.6819e+01	1dpoA/TR435-1dpoA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.47.1.2
1tn3A	4.6969e+01	1tn3A/TR435-1tn3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.169.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001