# List of top-scoring protein chains for TR435.t06-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2o8jA	281	1.09e-15		
2rfiA	285	2.42e-15		
2r3aA	300	2.71e-14		
2qpwA	149	4.08e-14		
2jv0A	163	5.06e-14		
1mvhA	299	1.47e-13	b.85.7.1	79500
3bo5A	290	5.38e-13		
2bqzA	161	9.09e-13		
1zkkA	167	1.02e-12		
1ml9A	302	5.36e-12	b.85.7.1	79282
1n3jA	119	2.08e-06	b.85.7.2	79963
3cbpA	256	8.71e-05		
1n6aA	259	9.46e-05	b.76.2.1,b.85.7.1	80121,80122
2f69A	261	9.85e-05	b.76.2.1,b.85.7.1	133035,133036
1xqhA	264	0.000105	b.76.2.1,b.85.7.1	115846,115847
1n6cA	297	0.000128	b.76.2.1,b.85.7.1	80123,80124
1h3iA	293	0.000181	b.76.2.1,b.85.7.1	76635,76636
1mufA	257	0.000540	b.76.2.1,b.85.7.1	79483,79484
1mt6A	280	0.000606	b.76.2.1,b.85.7.1	79446,79447
2pwzA	312	9.683	c.2.1.5,d.162.1.1	139766,139767
2cmdA	312	11.38	c.2.1.5,d.162.1.1	30135,42102
2gfiA	458	16.56		
1dqgA	135	20.77	b.42.2.2	25579
1fwuA	134	21.04	b.42.2.2	25580
1ovyA	120	27.69	c.55.4.1	93624
1ib6A	312	27.78	c.2.1.5,d.162.1.1	62146,62147
7fabH	217	30.25	b.1.1.1,b.1.1.2	19777,20887
1b9rA	105	38.76	d.15.4.1	37683
1z0fA	179	40.09	c.37.1.8	124313
2aedA	181	40.90	c.37.1.8	126619
1ta3B	303	50.29	c.1.8.3	106732
1tqyB	415	73.90	c.95.1.1,c.95.1.1	107247,107248
1dv1A	449	75.71	b.84.2.1,c.30.1.1,d.142.1.2	28234,31641,41486
1dv2A	452	76.19	b.84.2.1,c.30.1.1,d.142.1.2	28238,31645,41490
2uz5A	137	76.93		
2gpsA	469	77.05	b.84.2.1,c.30.1.1,d.142.1.2	135487,135488,135489
2b0pA	134	77.92		
2b44A	133	78.06		
2iugA	120	79.21		
2o9eA	234	80.35		
2o9dA	234	80.95		
2fu5C	183	84.18	c.37.1.8	134104
2ia0A	171	85.65