# List of top-scoring protein chains for t06-w0.5-1-str2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bo5A	290	2.54e-19		
2rfiA	285	3.78e-19		
2qpwA	149	5.78e-19		
2r3aA	300	7.90e-19		
1zkkA	167	8.47e-19		
2igqA	285	1.28e-18		
2o8jA	281	2.41e-18		
2f69A	261	4.27e-18	b.76.2.1,b.85.7.1	133035,133036
1n6aA	259	8.28e-18	b.76.2.1,b.85.7.1	80121,80122
1ml9A	302	2.83e-17	b.85.7.1	79282
1p0yA	444	4.25e-08	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	2.99e-07	a.166.1.1,b.85.7.3	135976,135977
1vkkA	154	2.167	d.109.1.2	108669
2ag4A	164	3.732	b.95.1.1	126717
1lm5A	214	6.018	d.211.2.1	74029
2pn1A	331	9.074		
1lm7A	248	9.131	d.211.2.1	74031
1rutX	188	11.16	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1zxuA	217	11.78	d.23.1.2	125796
1tn3A	137	13.24	d.169.1.1	42423
1r13A	148	14.64	d.169.1.1,h.1.1.1	96782,96783
1dpoA	223	16.43	b.47.1.2	25975
1v8yA	170	20.81	d.113.1.1	113581
2psoA	237	27.83		
1eaqA	140	29.34	b.2.5.6	76144
2qxiA	224	29.80		
1buuA	168	30.00	d.169.1.1,h.1.1.1	42366,45388
1wqjB	80	31.94		
2a19B	284	31.99		
2gb4A	252	32.16		
1oqjA	97	39.03	d.217.1.1	93417
2ganA	190	41.29	d.108.1.1	134889
1hg7A	66	43.14	b.85.1.1	28280
2b0vA	153	44.00	d.113.1.1	127650
2q4mA	217	46.08	d.23.1.2	139870
2zdrA	349	46.39		
1f7zA	233	46.48	b.47.1.2	59681
2pw0A	397	49.40		
1ucsA	64	49.54	b.85.1.1	88466
1f7sA	139	49.65	d.109.1.2	40857
2qecA	204	49.65		
2f57A	317	52.53		
1ygaA	342	57.46		
2a31A	223	57.58	b.47.1.2	126068
1l8fA	207	58.25	b.52.1.1	84537
1s9rA	410	58.43	d.126.1.4	98758
2rgxA	206	58.43		
2eng	210	58.58		
1grjA	158	61.55	a.2.1.1,d.26.1.2	15691,38433
2qsfA	533	62.46		
2jz8A	87	62.51		
1ia8A	289	62.93	d.144.1.7	62112
1xuuA	349	64.03	b.85.1.1,c.1.10.6	116067,116068
2bazA	142	64.08		
2engA	210	65.07	b.52.1.1	26895
3cqbA	107	65.88		
1yghA	164	69.98	d.108.1.1	40802
2dafA	118	70.43		
1gpr	162	71.10		
2dg1A	333	71.55	b.68.6.1	131493
1qpcA	279	72.13	d.144.1.7	41685
2oynA	146	74.56		
2ra3A	224	74.63		
1k1xA	659	76.48	a.8.3.2,b.30.5.8,c.6.2.2	84279,84280,84281
1yj1A	76	78.43	k.45.1.1	123377
2r9pA	224	79.05		
1q3oA	109	79.67	b.36.1.1	95700
1y8tA	324	81.12	b.36.1.4,b.47.1.1	122763,122764
1vliA	385	81.84	b.85.1.1,c.1.10.6	108830,108831
1rdo1	113	89.70