# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bo5A	290	2.38e-20		
2qpwA	149	2.82e-20		
2r3aA	300	7.41e-20		
1zkkA	167	1.13e-19		
2rfiA	285	1.15e-19		
2igqA	285	3.20e-19		
2f69A	261	4.33e-19	b.76.2.1,b.85.7.1	133035,133036
2o8jA	281	9.17e-19		
1n6aA	259	3.49e-18	b.76.2.1,b.85.7.1	80121,80122
1ml9A	302	8.53e-18	b.85.7.1	79282
1p0yA	444	6.10e-09	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	8.79e-08	a.166.1.1,b.85.7.3	135976,135977
1vkkA	154	2.605	d.109.1.2	108669
2pn1A	331	2.640		
2ag4A	164	2.894	b.95.1.1	126717
1lm5A	214	3.845	d.211.2.1	74029
1lm7A	248	10.05	d.211.2.1	74031
1rutX	188	12.04	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1dpoA	223	12.96	b.47.1.2	25975
2eng	210	15.61		
2engA	210	17.33	b.52.1.1	26895
1wqjB	80	20.09		
1r13A	148	21.60	d.169.1.1,h.1.1.1	96782,96783
1ygaA	342	22.96		
1tn3A	137	23.82	d.169.1.1	42423
1s9rA	410	27.91	d.126.1.4	98758
1l8fA	207	31.33	b.52.1.1	84537
1v8yA	170	35.53	d.113.1.1	113581
2qxiA	224	35.57		
1buuA	168	37.06	d.169.1.1,h.1.1.1	42366,45388
1gveA	327	40.50	c.1.7.1	70597
1yj1A	76	40.92	k.45.1.1	123377
2zdrA	349	42.74		
1eaqA	140	44.26	b.2.5.6	76144
1xuuA	349	44.67	b.85.1.1,c.1.10.6	116067,116068
1r0uA	148	47.39	b.60.1.5	96741
1oqjA	97	49.88	d.217.1.1	93417
1gpr	162	50.59		
2rgxA	206	50.92		
2a31A	223	52.70	b.47.1.2	126068
2r9pA	224	55.57		
2jz8A	87	56.30		
1vm9A	111	56.37	b.33.1.1	108886
1f7zA	233	56.59	b.47.1.2	59681
2ra3A	224	60.82		
1dv1A	449	61.59	b.84.2.1,c.30.1.1,d.142.1.2	28234,31641,41486
1f7sA	139	63.70	d.109.1.2	40857
2pw0A	397	64.22		
1hg7A	66	67.11	b.85.1.1	28280
2p3wA	112	68.13		
2psoA	237	70.72		
1zrrA	179	71.78	b.82.1.6	125555
2ganA	190	74.02	d.108.1.1	134889
2ouxA	286	74.69		
1kxgA	152	76.63	b.22.1.1	73145
1fxyA	228	76.67	b.47.1.2	26347
1ucsA	64	78.54	b.85.1.1	88466
2pcxA	220	79.69		
1vliA	385	80.04	b.85.1.1,c.1.10.6	108830,108831
2o5hA	136	80.64		
1wleA	501	83.13		
1kg0C	136	83.62	d.169.1.1	72445
2q4mA	217	84.86	d.23.1.2	139870
1grjA	158	85.10	a.2.1.1,d.26.1.2	15691,38433
1f3zA	161	87.33	b.84.3.1	28273
2gb4A	252	88.40		
1zxuA	217	89.52	d.23.1.2	125796
2oryA	346	89.84