# List of top-scoring protein chains for t06-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2rfiA	285	9.02e-18		
3bo5A	290	1.02e-17		
2r3aA	300	2.00e-17		
2qpwA	149	2.55e-17		
2igqA	285	3.93e-17		
2o8jA	281	5.51e-17		
1zkkA	167	1.11e-16		
1ml9A	302	6.69e-16	b.85.7.1	79282
2f69A	261	1.24e-15	b.76.2.1,b.85.7.1	133035,133036
1n6aA	259	1.82e-15	b.76.2.1,b.85.7.1	80121,80122
1p0yA	444	2.09e-07	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	4.42e-07	a.166.1.1,b.85.7.3	135976,135977
1vkkA	154	5.195	d.109.1.2	108669
1lm5A	214	7.855	d.211.2.1	74029
2pn1A	331	11.33		
2ag4A	164	12.41	b.95.1.1	126717
1s9rA	410	20.11	d.126.1.4	98758
2h9aB	310	20.54		
1xd7A	145	20.77	a.4.5.55	109566
1q3oA	109	28.34	b.36.1.1	95700
2av4A	162	32.51		
1ygaA	342	32.64		
1lm7A	248	33.81	d.211.2.1	74031
2vphA	100	39.95		
1hg7A	66	43.76	b.85.1.1	28280
1nf3C	128	45.00	b.36.1.1	85596
2qkvA	96	45.16		
1rutX	188	46.35	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
2i1nA	102	50.19		
2jikA	101	50.51		
1mfgA	95	52.64	b.36.1.1	79043
1sr2A	116	52.96	a.24.10.4	112109
2rgxA	206	53.71		
1f7zA	233	54.74	b.47.1.2	59681
1ucsA	64	55.37	b.85.1.1	88466
1f7sA	139	59.69	d.109.1.2	40857
2zdrA	349	63.33		
1yj1A	76	66.36	k.45.1.1	123377
1v8yA	170	66.57	d.113.1.1	113581
1avsA	90	67.21	a.39.1.5	17226
2he2A	102	67.93		
1vliA	385	70.10	b.85.1.1,c.1.10.6	108830,108831
1gveA	327	70.22	c.1.7.1	70597
1vh0A	161	70.45	c.116.1.3	100626
2awxA	105	70.86		
2h2bA	107	73.59		
1dcoA	104	74.56	d.74.1.1	39680
3cqbA	107	75.59		
5palA	109	76.28	a.39.1.4	17215
1exbA	332	77.72	c.1.7.1	28666
1dpoA	223	78.10	b.47.1.2	25975
1qavA	90	78.27	b.36.1.1	24777
2h3lA	103	81.01	b.36.1.1	136046
2btoA	473	82.40		
2qruA	274	84.69		
1c4eA	35	86.05	g.3.4.1	44080
2p3wA	112	86.56		
1qpcA	279	87.36	d.144.1.7	41685
2eng	210	88.75		
2rczA	81	88.78		
1alvA	173	89.60	a.39.1.8	17370