# List of top-scoring protein chains for t06-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3bo5A 290 3.09e-21 2qpwA 149 3.99e-21 2r3aA 300 2.10e-20 1zkkA 167 4.73e-20 2igqA 285 9.35e-20 2f69A 261 1.46e-19 b.76.2.1,b.85.7.1 133035,133036 1n6aA 259 7.52e-19 b.76.2.1,b.85.7.1 80121,80122 1ml9A 302 8.95e-19 b.85.7.1 79282 2rfiA 285 1.12e-18 2o8jA 281 5.15e-18 1p0yA 444 3.85e-09 a.166.1.1,b.85.7.3 87654,87655 2h21A 440 1.27e-08 a.166.1.1,b.85.7.3 135976,135977 1zxuA 217 0.9689 d.23.1.2 125796 3silA 379 1.751 b.68.1.1 27542 2bazA 142 2.132 1tt0A 623 3.393 1m2tB 263 4.195 b.42.2.1,b.42.2.1 84762,84763 2nutA 769 4.700 1lm5A 214 7.294 d.211.2.1 74029 1fs7A 485 8.175 a.138.1.3 19691 3sil 379 8.236 1ecfA 504 9.543 c.61.1.1,d.153.1.1 34053,41820 1vkkA 154 9.662 d.109.1.2 108669 1r13A 148 11.17 d.169.1.1,h.1.1.1 96782,96783 1tn3A 137 11.68 d.169.1.1 42423 2d5lA 706 13.61 2vngA 180 13.94 1rutX 188 14.58 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 1cruA 454 15.94 b.68.2.1 27617 1o7jA 327 16.09 c.88.1.1 81140 2q8nA 460 16.60 1tonA 235 17.63 b.47.1.2 26307 2pn1A 331 20.35 1xd7A 145 21.29 a.4.5.55 109566 1mi3A 322 21.41 c.1.7.1 91274 1oaoC 729 21.62 e.26.1.3 86746 2imhA 231 21.63 1oqjA 97 25.63 d.217.1.1 93417 1wqjB 80 26.77 2pvaA 345 27.25 d.153.1.3 41850 2qzuA 491 28.14 2owbA 335 29.38 1ppjB 439 29.57 d.185.1.1,d.185.1.1 104254,104255 1fxyA 228 30.03 b.47.1.2 26347 2psoA 237 32.19 1dv1A 449 32.46 b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1a9xA 1058 32.77 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1eaqA 140 33.43 b.2.5.6 76144 1l1nA 183 38.26 b.47.1.4 73476 1buuA 168 39.13 d.169.1.1,h.1.1.1 42366,45388 1kcwA 1046 39.32 b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3,b.6.1.3 23151,23152,23153,23154,23155,23156 2yzqA 282 42.24 1p4tA 155 42.79 f.4.1.1 87779 1hr6B 443 43.94 d.185.1.1,d.185.1.1 61166,61167 1ur1A 378 44.24 c.1.8.3 99804 2opwA 291 45.06 1lm7A 248 45.43 d.211.2.1 74031 1bheA 376 45.60 b.80.1.3 28030 2gc7A 386 46.66 b.69.2.1 134954 1ppjA 446 48.14 d.185.1.1,d.185.1.1 104252,104253 1qfhA 212 48.36 b.1.18.10,b.1.18.10 21893,21894 1ktgA 138 49.62 d.113.1.1 72972 1gpr 162 49.85 1yghA 164 50.13 d.108.1.1 40802 1kmoA 774 50.73 f.4.3.3 72753 1k0fA 277 51.14 c.92.2.2 71974 1zrrA 179 51.72 b.82.1.6 125555 3d9aH 210 53.30 2rgxA 206 53.33 2zbtA 297 54.05 1icpA 376 55.21 c.1.4.1 62270 1vliA 385 56.23 b.85.1.1,c.1.10.6 108830,108831 1wu2A 396 56.24 b.85.6.1,b.103.1.1,c.57.1.2 114884,114885,114886 2scpA 174 56.75 a.39.1.5 17256 1cs0A 1073 56.96 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 2hoeA 380 59.28 a.4.5.63,c.55.1.10,c.55.1.10 136639,136640,136641 2oh5A 248 60.04 2v05A 311 60.40 2r19A 159 61.91 2bogX 286 63.43 2z1aA 552 64.05 1yifA 533 65.01 b.29.1.23,b.67.2.1 123283,123284 1dunA 134 66.26 b.85.4.1 28371 3tmkA 216 67.31 c.37.1.1 31920 1l8fA 207 68.90 b.52.1.1 84537 1a0jA 223 69.20 b.47.1.2 26002 2tpt 440 70.40 1qpcA 279 70.68 d.144.1.7 41685 1m3yA 413 71.55 b.121.2.3,b.121.2.3 78579,78580 1ao5A 237 74.57 b.47.1.2 26334 2v4bA 300 75.16 2sakA 121 77.13 d.15.5.1 37711 1qorA 327 78.94 b.35.1.2,c.2.1.1 24766,29782 1y7bA 542 80.01 b.29.1.23,b.67.2.1 122687,122688 1exbA 332 80.21 c.1.7.1 28666 2hr7A 486 80.65 1ylkA 172 82.48 2jz8A 87 83.55 2sak 121 86.92 1j4aA 333 88.83 c.2.1.4,c.23.12.1 71502,71503 1hg7A 66 89.39 b.85.1.1 28280 1otkA 249 89.91 a.25.1.2 93521