# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qpwA	149	2.82e-18		
3bo5A	290	2.89e-18		
2r3aA	300	5.37e-18		
2igqA	285	1.74e-17		
2rfiA	285	1.76e-17		
1zkkA	167	1.78e-17		
2o8jA	281	5.56e-17		
2f69A	261	6.84e-17	b.76.2.1,b.85.7.1	133035,133036
1n6aA	259	2.31e-16	b.76.2.1,b.85.7.1	80121,80122
1ml9A	302	3.99e-16	b.85.7.1	79282
1p0yA	444	8.14e-08	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	5.67e-07	a.166.1.1,b.85.7.3	135976,135977
1vkkA	154	2.907	d.109.1.2	108669
1lm5A	214	4.467	d.211.2.1	74029
2ag4A	164	6.292	b.95.1.1	126717
1lm7A	248	12.94	d.211.2.1	74031
2pn1A	331	14.06		
1rutX	188	14.11	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1zxuA	217	16.03	d.23.1.2	125796
1tn3A	137	18.84	d.169.1.1	42423
1dpoA	223	25.22	b.47.1.2	25975
1ygaA	342	25.82		
1svb	395	28.16		
2qxiA	224	32.31		
2rgxA	206	34.99		
1r13A	148	35.04	d.169.1.1,h.1.1.1	96782,96783
2zdrA	349	38.39		
2a19B	284	38.93		
1eaqA	140	40.37	b.2.5.6	76144
1wqjB	80	41.76		
1hg7A	66	43.75	b.85.1.1	28280
1f7sA	139	46.74	d.109.1.2	40857
1v8yA	170	46.94	d.113.1.1	113581
1ucsA	64	47.07	b.85.1.1	88466
1snzA	344	50.38	b.30.5.4	98930
1gveA	327	51.45	c.1.7.1	70597
2fwvA	226	51.64		
2bazA	142	52.42		
1buuA	168	53.17	d.169.1.1,h.1.1.1	42366,45388
1xuuA	349	54.75	b.85.1.1,c.1.10.6	116067,116068
2jz8A	87	56.97		
1gpr	162	57.60		
1oqjA	97	58.36	d.217.1.1	93417
2qsfA	533	62.92		
2pcxA	220	64.13		
2b0vA	153	65.72	d.113.1.1	127650
2psoA	237	66.47		
2nutB	753	67.53		
1ru3A	732	71.61	e.26.1.3	97835
1vliA	385	73.49	b.85.1.1,c.1.10.6	108830,108831
1yj1A	76	75.69	k.45.1.1	123377
1grjA	158	75.75	a.2.1.1,d.26.1.2	15691,38433
2q4mA	217	76.23	d.23.1.2	139870
1l8fA	207	76.37	b.52.1.1	84537
1s9rA	410	76.45	d.126.1.4	98758
2gb4A	252	78.34		
1oaoC	729	78.71	e.26.1.3	86746
1zrrA	179	79.89	b.82.1.6	125555
2ra3A	224	82.08		
2gekA	406	85.54		
2engA	210	88.81	b.52.1.1	26895
1dv1A	449	89.87	b.84.2.1,c.30.1.1,d.142.1.2	28234,31641,41486