# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bo5A	290	4.24e-19		
2qpwA	149	6.36e-19		
2r3aA	300	1.22e-18		
1zkkA	167	2.12e-18		
2rfiA	285	2.31e-18		
2igqA	285	3.05e-18		
2f69A	261	9.18e-18	b.76.2.1,b.85.7.1	133035,133036
2o8jA	281	1.29e-17		
1n6aA	259	3.16e-17	b.76.2.1,b.85.7.1	80121,80122
1ml9A	302	8.08e-17	b.85.7.1	79282
1p0yA	444	2.99e-08	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	1.51e-07	a.166.1.1,b.85.7.3	135976,135977
1vkkA	154	3.191	d.109.1.2	108669
2ag4A	164	7.477	b.95.1.1	126717
1lm5A	214	8.520	d.211.2.1	74029
1tn3A	137	10.25	d.169.1.1	42423
2pn1A	331	13.79		
1lm7A	248	13.90	d.211.2.1	74031
1rutX	188	19.37	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1dpoA	223	24.02	b.47.1.2	25975
1ygaA	342	24.32		
1r13A	148	25.74	d.169.1.1,h.1.1.1	96782,96783
1v8yA	170	29.69	d.113.1.1	113581
1eaqA	140	31.76	b.2.5.6	76144
2qxiA	224	37.31		
1wqjB	80	38.45		
2psoA	237	38.80		
1zrrA	179	41.15	b.82.1.6	125555
2eng	210	41.50		
2engA	210	42.23	b.52.1.1	26895
1l8fA	207	44.73	b.52.1.1	84537
2a19B	284	47.88		
1buuA	168	48.17	d.169.1.1,h.1.1.1	42366,45388
2bazA	142	49.36		
1gpr	162	56.26		
2iuyA	342	58.04		
2ouxA	286	59.59		
1svb	395	60.54		
2av4A	162	64.60		
1zxuA	217	66.43	d.23.1.2	125796
1f7sA	139	70.91	d.109.1.2	40857
2a31A	223	72.10	b.47.1.2	126068
2orzA	314	72.54		
2jz8A	87	72.76		
2gekA	406	73.07		
1s9rA	410	73.25	d.126.1.4	98758
1kxgA	152	73.60	b.22.1.1	73145
2rgxA	206	73.60		
2ra3A	224	74.50		
2nutB	753	75.76		
1hg7A	66	80.48	b.85.1.1	28280
1grjA	158	80.54	a.2.1.1,d.26.1.2	15691,38433
2pcxA	220	81.00		
1rdo1	113	83.73		
2fwvA	226	86.61		
2gb4A	252	86.68