# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bo5A	290	3.82e-18		
2qpwA	149	5.16e-18		
2r3aA	300	6.57e-18		
2rfiA	285	9.61e-18		
1zkkA	167	1.58e-17		
2igqA	285	1.66e-17		
2o8jA	281	3.32e-17		
2f69A	261	3.79e-17	b.76.2.1,b.85.7.1	133035,133036
1n6aA	259	1.51e-16	b.76.2.1,b.85.7.1	80121,80122
1ml9A	302	2.74e-16	b.85.7.1	79282
1p0yA	444	1.16e-07	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	1.78e-07	a.166.1.1,b.85.7.3	135976,135977
2ag4A	164	3.429	b.95.1.1	126717
1vkkA	154	3.742	d.109.1.2	108669
1lm5A	214	5.237	d.211.2.1	74029
2pn1A	331	6.960		
1lm7A	248	10.03	d.211.2.1	74031
1l8fA	207	16.61	b.52.1.1	84537
2eng	210	16.74		
2engA	210	18.60	b.52.1.1	26895
1rutX	188	21.27	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
2psoA	237	24.49		
1tn3A	137	25.44	d.169.1.1	42423
1v8yA	170	28.47	d.113.1.1	113581
1dpoA	223	31.19	b.47.1.2	25975
1wqjB	80	31.29		
1xuuA	349	33.70	b.85.1.1,c.1.10.6	116067,116068
2zdrA	349	35.30		
1zxuA	217	37.92	d.23.1.2	125796
2jz8A	87	44.72		
1gpr	162	46.39		
1f7sA	139	46.90	d.109.1.2	40857
1dv1A	449	53.43	b.84.2.1,c.30.1.1,d.142.1.2	28234,31641,41486
1r13A	148	55.26	d.169.1.1,h.1.1.1	96782,96783
1yj1A	76	55.82	k.45.1.1	123377
1svb	395	57.54		
1vliA	385	59.09	b.85.1.1,c.1.10.6	108830,108831
2nutB	753	59.99		
2gb4A	252	61.29		
1hg7A	66	64.45	b.85.1.1	28280
1grjA	158	67.28	a.2.1.1,d.26.1.2	15691,38433
2orzA	314	68.65		
2qsfA	533	70.87		
2zbtA	297	71.10		
1ygaA	342	72.19		
2bazA	142	73.14		
2av4A	162	75.41		
1ucsA	64	76.57	b.85.1.1	88466
2rgxA	206	77.64		
2qxiA	224	78.24		
1vm9A	111	78.75	b.33.1.1	108886
2pcxA	220	81.18		
1f7zA	233	81.18	b.47.1.2	59681
3fruA	269	81.41	b.1.1.2,d.19.1.1	20657,38150
1s9rA	410	81.76	d.126.1.4	98758
1buuA	168	84.46	d.169.1.1,h.1.1.1	42366,45388