# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3bo5A	290	2.28e-20		
2qpwA	149	2.61e-20		
2r3aA	300	4.97e-20		
2rfiA	285	7.62e-20		
1zkkA	167	1.06e-19		
2igqA	285	1.21e-19		
2o8jA	281	3.98e-19		
2f69A	261	5.12e-19	b.76.2.1,b.85.7.1	133035,133036
1n6aA	259	2.22e-18	b.76.2.1,b.85.7.1	80121,80122
1ml9A	302	3.69e-18	b.85.7.1	79282
1p0yA	444	8.43e-09	a.166.1.1,b.85.7.3	87654,87655
2h21A	440	2.14e-08	a.166.1.1,b.85.7.3	135976,135977
2ag4A	164	2.639	b.95.1.1	126717
1vkkA	154	4.160	d.109.1.2	108669
2pn1A	331	4.264		
1rutX	188	4.382	g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3	111939,111940,111941,111942
1lm5A	214	4.521	d.211.2.1	74029
1lm7A	248	9.428	d.211.2.1	74031
1wqjB	80	10.45		
2bazA	142	21.48		
1l8fA	207	22.80	b.52.1.1	84537
2engA	210	24.02	b.52.1.1	26895
2eng	210	25.59		
1yj1A	76	25.83	k.45.1.1	123377
1v8yA	170	29.74	d.113.1.1	113581
2psoA	237	30.79		
1dv1A	449	33.02	b.84.2.1,c.30.1.1,d.142.1.2	28234,31641,41486
1s9rA	410	33.16	d.126.1.4	98758
1ygaA	342	34.38		
2rgxA	206	34.46		
1zxuA	217	35.80	d.23.1.2	125796
1hg7A	66	36.93	b.85.1.1	28280
1xuuA	349	37.18	b.85.1.1,c.1.10.6	116067,116068
1tn3A	137	37.80	d.169.1.1	42423
1dpoA	223	38.37	b.47.1.2	25975
2zdrA	349	41.44		
1ucsA	64	41.49	b.85.1.1	88466
1eaqA	140	42.78	b.2.5.6	76144
1snzA	344	44.81	b.30.5.4	98930
2zbtA	297	45.53		
1rzhH	260	50.34	b.41.1.1,f.23.10.1	98162,98163
1oqjA	97	51.60	d.217.1.1	93417
2qsfA	533	53.80		
2gekA	406	57.28		
2qxiA	224	58.58		
1gpr	162	61.33		
2jz8A	87	61.88		
2nutB	753	63.13		
2a19B	284	65.62		
1gveA	327	67.17	c.1.7.1	70597
1f7zA	233	67.46	b.47.1.2	59681
1zrrA	179	69.70	b.82.1.6	125555
1vliA	385	74.95	b.85.1.1,c.1.10.6	108830,108831
1svb	395	75.72		
3fruA	269	75.82	b.1.1.2,d.19.1.1	20657,38150
2b0vA	153	77.24	d.113.1.1	127650
2vphA	100	77.80		
2fwvA	226	80.84		
2dafA	118	82.98		
2pwaA	279	84.05	c.41.1.1	139762
1j2lA	70	88.71	g.20.1.1	90787