Best Alignments for TR435

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
2o8jA	5.3878e-32	2o8jA/TR435-2o8jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2rfiA	1.4034e-31	2rfiA/TR435-2rfiA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2igqA	3.1821e-30	2igqA/TR435-2igqA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2r3aA	3.9931e-30	2r3aA/TR435-2r3aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3bo5A	4.7768e-30	3bo5A/TR435-3bo5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qpwA	1.6609e-28	2qpwA/TR435-2qpwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1n6aA	5.2202e-28	1n6aA/TR435-1n6aA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.76.2.1 b.85.7.1
2f69A	1.0866e-27	2f69A/TR435-2f69A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.76.2.1 b.85.7.1
1zkkA	4.1406e-27	1zkkA/TR435-1zkkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1ml9A	5.0914e-26	1ml9A/TR435-1ml9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.85.7.1
1n3jA	3.7941e-21	1n3jA/TR435-1n3jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.85.7.2
2h21A	3.0589e-15	2h21A/TR435-2h21A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.166.1.1 b.85.7.3
1p0yA	1.0015e-14	1p0yA/TR435-1p0yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.166.1.1 b.85.7.3
1lm5A	5.9332e+00	1lm5A/TR435-1lm5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.211.2.1
1lm7A	7.2908e+00	1lm7A/TR435-1lm7A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.211.2.1
1h9dA	1.0247e+01	1h9dA/TR435-1h9dA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.2.5.6
1abrB	1.4764e+01	1abrB/TR435-1abrB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.42.2.1 b.42.2.1
1gky	1.6961e+01	1gky/TR435-1gky-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1v6fA	1.7591e+01	1v6fA/TR435-1v6fA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	d.109.1.2
2ag9A	2.0225e+01	2ag9A/TR435-2ag9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001