# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r3aA 300 1.12e-30 2qpwA 149 6.79e-30 2rfiA 285 9.83e-30 2o8jA 281 1.07e-29 1n6aA 259 1.87e-29 b.76.2.1,b.85.7.1 80121,80122 3bo5A 290 3.15e-29 2f69A 261 5.80e-29 b.76.2.1,b.85.7.1 133035,133036 2igqA 285 9.76e-29 1zkkA 167 1.72e-28 1ml9A 302 1.76e-28 b.85.7.1 79282 1n3jA 119 2.38e-21 b.85.7.2 79963 2h21A 440 2.00e-13 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 5.46e-13 a.166.1.1,b.85.7.3 87654,87655 1lm7A 248 1.910 d.211.2.1 74031 1lm5A 214 2.537 d.211.2.1 74029 1v6fA 151 3.267 d.109.1.2 108395 1qexA 288 3.448 b.32.1.1 24425 1abrB 267 4.086 b.42.2.1,b.42.2.1 25563,25564 1h9dA 134 4.590 b.2.5.6 60821 1gky 187 5.097 2ag9A 164 5.553 2ag4A 164 8.910 b.95.1.1 126717 1ybiA 288 10.34 1fvrA 327 11.97 d.144.1.7 60047 2psoA 237 12.04 2ohcA 289 12.23 1k0rA 366 12.46 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 2p52A 196 14.13 1uasA 362 14.28 b.71.1.1,c.1.8.1 88388,88389 1mq7A 154 15.30 b.85.4.1 79404 2yzuA 109 16.61 2pcxA 220 16.63 1sz6B 263 16.84 b.42.2.1,b.42.2.1 112172,112173 1fl2A 310 16.84 c.3.1.5,c.3.1.5 59869,59870 1thxA 115 18.41 c.47.1.1 32732 1qcsA 211 20.04 b.52.2.3,d.31.1.1 26927,38461 1f7dA 136 20.08 b.85.4.1 28353 2cvkA 110 21.45 1wmzA 140 21.50 d.169.1.1 109422 1f7sA 139 21.54 d.109.1.2 40857 1eaqA 140 22.95 b.2.5.6 76144 1hh2P 344 24.41 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 2e0qA 104 25.89 1r94A 118 26.26 b.124.1.1 97251 1vmeA 410 27.11 c.23.5.1,d.157.1.3 108893,108894 1q40B 219 27.55 d.17.4.2 95771 1s98A 107 27.72 b.124.1.1 105377 2agcA 162 29.22 1jv4A 162 29.65 b.60.1.1 67343 1gpr 162 32.72 1tuc 63 35.00 1a8lA 226 35.49 c.47.1.2,c.47.1.2 32777,32778 2fb2A 340 36.04 1k6wA 426 36.41 b.92.1.2,c.1.9.5 68236,68237 2b0vA 153 36.57 d.113.1.1 127650 1u1zA 168 37.07 d.38.1.6 107602 2aaiB 262 38.62 b.42.2.1,b.42.2.1 25561,25562 2i5oA 39 40.09 2p9oA 169 40.15 2drhA 361 40.25 1gcqA 61 41.23 b.34.2.1 60434 2vphA 100 41.25 2bsyA 278 41.44 b.85.4.1,b.85.4.1 129129,129130 2qntA 141 41.76 1jk7A 323 41.89 d.159.1.3 63144 1g8kB 133 42.08 b.33.1.1 24435 2prvA 153 42.08 1hyuA 521 42.16 c.3.1.5,c.3.1.5,c.47.1.2,c.47.1.2 30547,30548,32779,32780 1q5hA 147 44.83 b.85.4.1 95893 1hq8A 123 45.28 d.169.1.1 61127 2asbA 251 45.87 b.40.4.5,d.52.3.1,d.52.3.1 127244,127245,127246 1semA 58 46.15 b.34.2.1 24544 1knmA 130 46.95 b.42.2.1 72781 1tu1A 148 47.50 d.107.1.3 107316 1sixA 174 48.06 b.85.4.1 98892 1a2vA 655 50.07 b.30.2.1,d.17.2.1,d.17.2.1 24416,38059,38060 2bz8A 58 50.25 2v90A 96 50.99 2g09A 297 51.36 3cbwA 353 51.37 2z1uA 343 51.44 1zx6A 58 51.67 1wh0A 134 53.36 b.15.1.3 114628 1m40A 263 54.15 e.3.1.1 74437 2cxcA 144 55.77 2iyaA 424 55.88 2ioiA 201 56.01 1xuuA 349 56.52 b.85.1.1,c.1.10.6 116067,116068 1qf9A 194 56.55 c.37.1.1 31848 1y97A 238 59.03 c.55.3.5 122773 2ppnA 107 60.06 1cl8A 276 60.33 c.52.1.1 33230 3cqbA 107 62.00 1hd3A 62 62.58 b.34.2.1 65802 3b3fA 341 65.29 2pn0A 141 66.59 1ci0A 228 66.62 b.45.1.1 25750 1oqyA 368 66.62 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1u06A 62 66.90 b.34.2.1 119404 1bkf 107 67.43 1txkA 498 67.47 b.1.18.2,b.30.5.9 107425,107426 1vlyA 338 67.86 b.44.2.1,d.250.1.1 108871,108872 1grjA 158 68.73 a.2.1.1,d.26.1.2 15691,38433 1eo9A 209 69.44 b.3.6.1 22731 2oo4A 234 69.54 1onqA 283 71.15 b.1.1.2,d.19.1.1 93365,93366 2zbtA 297 71.38 1dunA 134 71.87 b.85.4.1 28371 1ywpA 64 71.95 2ac0A 200 72.33 b.2.5.2 126539 1v5lA 103 72.67 b.36.1.1 108378 2fwvA 226 72.78 1t46A 313 72.97 d.144.1.7 106397 2a6sA 84 73.32 d.298.1.1 126305 1utiA 58 73.60 b.34.2.1 99962 1zlmA 58 74.41 1m2tB 263 74.99 b.42.2.1,b.42.2.1 84762,84763 2j21A 219 75.93 1ybyA 215 76.16 1yub 245 77.76 1g13A 162 78.86 b.95.1.1 60194 2g6fX 59 79.79 1akyA 220 80.09 c.37.1.1,g.41.2.1 31896,45197 2drmA 58 80.48 1nrgA 261 80.48 b.45.1.1 80694 2gncA 60 80.65 1twfK 120 80.75 d.74.3.2 112736 1oebA 62 81.87 b.34.2.1 86909 2de6A 392 83.51 b.33.1.2,d.129.3.3 131415,131416 1y0mA 61 85.82 1dyoA 160 87.26 b.18.1.7 23771 1rutX 188 87.81 g.39.1.3,g.39.1.3,g.39.1.3,g.39.1.3 111939,111940,111941,111942 2rgxA 206 88.54