# List of top-scoring protein chains for t04-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qpwA 149 5.29e-33 2r3aA 300 6.58e-33 2rfiA 285 4.25e-32 2f69A 261 9.72e-32 b.76.2.1,b.85.7.1 133035,133036 2o8jA 281 2.11e-31 1n6aA 259 2.33e-31 b.76.2.1,b.85.7.1 80121,80122 3bo5A 290 2.88e-31 1zkkA 167 5.99e-31 2igqA 285 6.53e-31 1ml9A 302 1.05e-30 b.85.7.1 79282 1n3jA 119 3.34e-23 b.85.7.2 79963 2h21A 440 2.61e-15 a.166.1.1,b.85.7.3 135976,135977 1p0yA 444 2.91e-14 a.166.1.1,b.85.7.3 87654,87655 1lm7A 248 1.146 d.211.2.1 74031 1lm5A 214 1.194 d.211.2.1 74029 1abrB 267 2.529 b.42.2.1,b.42.2.1 25563,25564 1v6fA 151 4.122 d.109.1.2 108395 2ag9A 164 4.879 1uasA 362 6.242 b.71.1.1,c.1.8.1 88388,88389 2p52A 196 6.734 2ag4A 164 6.989 b.95.1.1 126717 1h9dA 134 7.119 b.2.5.6 60821 2pcxA 220 7.284 1qexA 288 7.446 b.32.1.1 24425 1gky 187 7.718 2cvkA 110 10.26 1mq7A 154 11.53 b.85.4.1 79404 2yzuA 109 11.90 1f7dA 136 12.78 b.85.4.1 28353 1ybiA 288 14.27 2ac0A 200 14.52 b.2.5.2 126539 1k6wA 426 14.96 b.92.1.2,c.1.9.5 68236,68237 1m40A 263 15.44 e.3.1.1 74437 2de6D 115 16.65 1wmzA 140 18.08 d.169.1.1 109422 2zbtA 297 19.03 2iyaA 424 19.88 1g8kB 133 19.92 b.33.1.1 24435 2e0qA 104 20.16 1qcsA 211 20.61 b.52.2.3,d.31.1.1 26927,38461 1hq8A 123 20.78 d.169.1.1 61127 1f7sA 139 22.30 d.109.1.2 40857 2agcA 162 23.49 1knmA 130 24.81 b.42.2.1 72781 1thxA 115 24.87 c.47.1.1 32732 1jv4A 162 24.95 b.60.1.1 67343 1gpr 162 25.23 1sz6B 263 25.30 b.42.2.1,b.42.2.1 112172,112173 1tzfA 259 25.43 c.68.1.13 107476 1xuuA 349 25.75 b.85.1.1,c.1.10.6 116067,116068 2aaiB 262 26.73 b.42.2.1,b.42.2.1 25561,25562 1akyA 220 27.25 c.37.1.1,g.41.2.1 31896,45197 1eaqA 140 27.38 b.2.5.6 76144 3b3fA 341 28.10 1w1hA 151 28.37 b.55.1.1 114076 2j21A 219 29.31 2ioiA 201 29.32 2ohcA 289 29.47 2psoA 237 31.77 2bsyA 278 31.88 b.85.4.1,b.85.4.1 129129,129130 1icmA 131 33.01 b.60.1.2 27174 1fl2A 310 34.74 c.3.1.5,c.3.1.5 59869,59870 1gln 468 35.17 1ifcA 132 35.29 b.60.1.2 27173 1l8fA 207 36.38 b.52.1.1 84537 1q40B 219 36.94 d.17.4.2 95771 1q5hA 147 37.26 b.85.4.1 95893 2de6A 392 38.21 b.33.1.2,d.129.3.3 131415,131416 2fb2A 340 38.72 1wl7A 312 39.03 b.67.2.1 120996 1o7eA 276 40.15 e.3.1.1 92622 1sixA 174 40.57 b.85.4.1 98892 2cmgA 262 40.83 1znwA 207 41.15 c.37.1.1 125412 1cpnA 208 43.38 b.29.1.2 24175 2eng 210 43.51 1tu1A 148 48.34 d.107.1.3 107316 2drhA 361 49.78 1ew0A 130 49.91 d.110.3.2 40905 2qntA 141 51.55 3b8bA 292 52.08 1genA 218 52.11 b.66.1.1 27536 1xj4A 119 52.17 d.110.3.2 122027 3cbwA 353 54.25 1a8lA 226 54.60 c.47.1.2,c.47.1.2 32777,32778 1hh2P 344 55.34 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 65835,65836,65837,65838 1tz9A 367 55.66 c.1.15.6 107466 1cl8A 276 55.88 c.52.1.1 33230 1r94A 118 57.43 b.124.1.1 97251 2i5oA 39 58.51 1qf9A 194 58.98 c.37.1.1 31848 1oqyA 368 59.61 a.5.2.1,a.5.2.1,a.189.1.1,d.15.1.1 93439,93440,93441,93442 1dunA 134 60.19 b.85.4.1 28371 1u8fO 335 60.60 c.2.1.3,d.81.1.1 119626,119627 2pn0A 141 62.01 2prvA 153 62.56 1nwbA 124 63.67 b.124.1.1 86296 1vk3A 615 64.04 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1k0rA 366 64.72 b.40.4.5,d.52.3.1,d.52.3.1,d.202.1.1 67961,67962,67963,67964 1sjgA 112 65.22 b.33.1.1 105647 1f3zA 161 66.19 b.84.3.1 28273 1nslA 184 67.02 d.108.1.1 86137 2zdrA 349 67.32 2oemA 413 67.49 1vmeA 410 67.58 c.23.5.1,d.157.1.3 108893,108894 1eo9A 209 69.66 b.3.6.1 22731 2fwvA 226 69.67 2p9oA 169 71.56 2a6sA 84 72.53 d.298.1.1 126305 1jk7A 323 74.57 d.159.1.3 63144 1es5A 262 74.98 e.3.1.1 42679 1grjA 158 76.03 a.2.1.1,d.26.1.2 15691,38433 1u1zA 168 76.53 d.38.1.6 107602 1swvA 267 77.02 c.108.1.3 112134 2ak4D 211 79.27 1gprA 162 81.33 b.84.3.1 28267 1onqA 283 81.41 b.1.1.2,d.19.1.1 93365,93366 1qxrA 189 82.37 b.82.1.7 96552 1s98A 107 83.12 b.124.1.1 105377 1sh7A 284 83.58 1tuc 63 83.62 1fvrA 327 84.97 d.144.1.7 60047 2rgxA 206 86.08 2vphA 100 88.92 2bcfA 276 89.13 2b0vA 153 89.49 d.113.1.1 127650 1bkf 107 89.68